Confidence Measures for Fold Recognition. - Ingolf Sommer; Niklas von Öhsen; Alexander Zien; Ralf Zimmer; Thomas Lengauer (German Conference on Bioinformatics, 2001)

Methods for refining interactively established models of ribosomal RNA towards a physico-chemically plausible structure. - Ingolf Sommer; Richard Brimacombe (J. Comput. Chem., 2001)

Confidence measures for protein fold recognition. - Ingolf Sommer; Alexander Zien; Niklas von Öhsen; Ralf Zimmer; Thomas Lengauer (Bioinform., 2002)

Profile-Profile Alignment: A Powerful Tool for Protein Structure Prediction. - Niklas von Öhsen; Ingolf Sommer; Ralf Zimmer (Pacific Symposium on Biocomputing, 2003)

The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. - Torsten Crass; Iris Antes; Rico Basekow; Peer Bork; Christian Buning; Maik Christensen; Holger Claussen 002; Christian Ebeling; Peter Ernst; Valérie Gailus-Durner; Karl-Heinz Glatting; Rolf Gohla; et al. (Bioinform., 2004)

Arby: automatic protein structure prediction using profile-profile alignment and confidence measures. - Niklas von Öhsen; Ingolf Sommer; Ralf Zimmer; Thomas Lengauer (Bioinform., 2004)

Predicting protein structure classes from function predictions. - Ingolf Sommer; Jörg Rahnenführer; Francisco S. Domingues; Ulrik de Lichtenberg; Thomas Lengauer (Bioinform., 2004)

Local protein structure prediction using discriminative models. - Oliver Sander; Ingolf Sommer; Thomas Lengauer (BMC Bioinform., 2006)

Improving the quality of protein structure models by selecting from alignment alternatives. - Ingolf Sommer; Stefano Toppo; Oliver Sander; Thomas Lengauer; Silvio C. E. Tosatto (BMC Bioinform., 2006)

NOXclass: prediction of protein-protein interaction types. - Hongbo Zhu 001; Francisco S. Domingues; Ingolf Sommer; Thomas Lengauer (BMC Bioinform., 2006)

Moment invariants as shape recognition technique for comparing protein binding sites. - Ingolf Sommer; Oliver Müller; Francisco S. Domingues; Oliver Sander; Joachim Weickert; Thomas Lengauer (Bioinform., 2007)

Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage. - Oliver Sander; Tobias Sing; Ingolf Sommer; Andrew J. Low; Peter K. Cheung; P. Richard Harrigan; Thomas Lengauer; Francisco S. Domingues (PLoS Comput. Biol., 2007)

Structural Descriptors of Protein-Protein Binding Sites. - Oliver Sander; Francisco S. Domingues; Hongbo Zhu 001; Thomas Lengauer; Ingolf Sommer (APBC, 2008)

Local Function Conservation in Sequence and Structure Space. - Nils Weinhold; Oliver Sander; Francisco S. Domingues; Thomas Lengauer; Ingolf Sommer (PLoS Comput. Biol., 2008)