Identification of drug-target interaction by a random walk with restart method on an interactome network. - Ingoo Lee; Hojung Nam (BMC Bioinform., 2018)

DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences. - Ingoo Lee; Jongsoo Keum; Hojung Nam (PLoS Comput. Biol., 2019)

BayeshERG: a robust, reliable and interpretable deep learning model for predicting hERG channel blockers. - Hyunho Kim; Minsu Park; Ingoo Lee; Hojung Nam (Briefings Bioinform., 2022)

Infusing Linguistic Knowledge of SMILES into Chemical Language Models. - Ingoo Lee; Hojung Nam (CoRR, 2022)

Sequence-based prediction of protein binding regions and drug-target interactions. - Ingoo Lee; Hojung Nam (J. Cheminformatics, 2022)

Evaluation of large language models for discovery of gene set function. - Mengzhou Hu; Sahar Alkhairy; Ingoo Lee; Rudolf T. Pillich; Robin Bachelder; Trey Ideker; Dexter Pratt (CoRR, 2023)