EcoCyc: a comprehensive database resource for Escherichia coli. - Ingrid M. Keseler; Julio Collado-Vides; Socorro Gama-Castro; John Ingraham; Suzanne M. Paley; Ian T. Paulsen; Martín Peralta-Gil; Peter D. Karp (Nucleic Acids Res., 2005)

EcoCyc: A comprehensive view of Escherichia coli biology. - Ingrid M. Keseler; César Bonavides-Martínez; Julio Collado-Vides; Socorro Gama-Castro; Robert P. Gunsalus; D. Aaron Johnson; Markus Krummenacker; Laura M. Nolan; Suzanne M. Paley; Ian T. Paulsen; Martín Peralta-Gil; Alberto D. Santos-Zavaleta; et al. (Nucleic Acids Res., 2009)

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology. - Peter D. Karp; Suzanne M. Paley; Markus Krummenacker; Mario Latendresse; Joseph M. Dale; Thomas J. Lee; Pallavi Kaipa; Fred Gilham; Aaron Spaulding; Liviu Popescu; Tomer Altman; Ian T. Paulsen; et al. (Briefings Bioinform., 2010)

EcoCyc: a comprehensive database of Escherichia coli biology. - Ingrid M. Keseler; Julio Collado-Vides; Alberto Santos-Zavaleta; Martín Peralta-Gil; Socorro Gama-Castro; Luis Muñiz-Rascado; César Bonavides-Martínez; Suzanne M. Paley; Markus Krummenacker; Tomer Altman; Pallavi Kaipa; Aaron Spaulding; et al. (Nucleic Acids Res., 2011)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. - Ron Caspi; Tomer Altman; Kate Dreher; Carol A. Fulcher; Pallavi Subhraveti; Ingrid M. Keseler; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Lukas A. Mueller; Quang Ong; Suzanne M. Paley; et al. (Nucleic Acids Res., 2012)

Computing minimal nutrient sets from metabolic networks via linear constraint solving. - Steven Eker; Markus Krummenacker; Alexander Glennon Shearer; Ashish Tiwari 001; Ingrid M. Keseler; Carolyn L. Talcott; Peter D. Karp (BMC Bioinform., 2013)

EcoCyc: fusing model organism databases with systems biology. - Ingrid M. Keseler; Amanda Mackie; Martín Peralta-Gil; Alberto Santos-Zavaleta; Socorro Gama-Castro; César Bonavides-Martínez; Carol A. Fulcher; Araceli M. Huerta; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Luis Muñiz-Rascado; et al. (Nucleic Acids Res., 2013)

Curation accuracy of model organism databases. - Ingrid M. Keseler; Marek S. Skrzypek; Deepika Weerasinghe; Albert Y. Chen; Carol A. Fulcher; Gene-Wei Li; Kimberly C. Lemmer; Katherine M. Mladinich; Edmond D. Chow; Gavin Sherlock; Peter D. Karp (Database J. Biol. Databases Curation, 2014)

A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database. - Daniel S. Weaver; Ingrid M. Keseler; Amanda Mackie; Ian T. Paulsen; Peter D. Karp (BMC Syst. Biol., 2014)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. - Ron Caspi; Tomer Altman; Richard Billington; Kate Dreher; Hartmut Foerster; Carol A. Fulcher; Timothy A. Holland; Ingrid M. Keseler; Anamika Kothari; Aya Kubo; Markus Krummenacker; Mario Latendresse; et al. (Nucleic Acids Res., 2014)

Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology. - Peter D. Karp; Mario Latendresse; Suzanne M. Paley; Markus Krummenacker; Quang Ong; Richard Billington; Anamika Kothari; Daniel S. Weaver; Thomas J. Lee; Pallavi Subhraveti; Aaron Spaulding; Carol A. Fulcher; et al. (Briefings Bioinform., 2016)

Overview of the interactive task in BioCreative V. - Qinghua Wang 003; Shabbir Syed-Abdul; Lara Almeida; Sophia Ananiadou; Yalbi I. Balderas-Martínez; Riza Batista-Navarro; David Campos 001; Lucy Chilton; Hui-Jou Chou; Gabriela Contreras; Laurel Cooper; Hong-Jie Dai; et al. (Database J. Biol. Databases Curation, 2016)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. - Ron Caspi; Richard Billington; Luciana Ferrer; Hartmut Foerster; Carol A. Fulcher; Ingrid M. Keseler; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Lukas A. Mueller; Quang Ong; Suzanne M. Paley; et al. (Nucleic Acids Res., 2016)

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. - Ingrid M. Keseler; Amanda Mackie; Alberto Santos-Zavaleta; Richard Billington; César Bonavides-Martínez; Ron Caspi; Carol A. Fulcher; Socorro Gama-Castro; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Luis Muñiz-Rascado; et al. (Nucleic Acids Res., 2017)

The MetaCyc database of metabolic pathways and enzymes. - Ron Caspi; Richard Billington; Carol A. Fulcher; Ingrid M. Keseler; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Peter E. Midford; Quang Ong; Wai Kit Ong; Suzanne M. Paley; Pallavi Subhraveti; et al. (Nucleic Acids Res., 2018)

The BioCyc collection of microbial genomes and metabolic pathways. - Peter D. Karp; Richard Billington; Ron Caspi; Carol A. Fulcher; Mario Latendresse; Anamika Kothari; Ingrid M. Keseler; Markus Krummenacker; Peter E. Midford; Quang Ong; Wai Kit Ong; Suzanne M. Paley; et al. (Briefings Bioinform., 2019)

The MetaCyc database of metabolic pathways and enzymes - a 2019 update. - Ron Caspi; Richard Billington; Ingrid M. Keseler; Anamika Kothari; Markus Krummenacker; Peter E. Midford; Wai Kit Ong; Suzanne M. Paley; Pallavi Subhraveti; Peter D. Karp (Nucleic Acids Res., 2020)

Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology. - Peter D. Karp; Peter E. Midford; Richard Billington; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Wai Kit Ong; Pallavi Subhraveti; Ron Caspi; Carol A. Fulcher; Ingrid M. Keseler; Suzanne M. Paley (Briefings Bioinform., 2021)