gMCS: fast computation of genetic minimal cut sets in large networks. - Iñigo Apaolaza; Luis Vitores Valcarcel; Francisco J. Planes (Bioinform., 2019)

On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models. - Miguel Ponce de Leon; Iñigo Apaolaza; Alfonso Valencia; Francisco J. Planes (Bioinform., 2020)

A network-based approach to integrate nutrient microenvironment in the prediction of synthetic lethality in cancer metabolism. - Iñigo Apaolaza; Edurne San José-Enériz; Luis Vitores Valcarcel; Xabier Agirre; Felipe Prósper; Francisco J. Planes (PLoS Comput. Biol., 2022)