Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata. - Inke Herms; Sven Rahmann (WABI, 2008)

Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling. - Stefan Wolfsheimer; Inke Herms; Sven Rahmann; Alexander K. Hartmann (BMC Bioinform., 2011)

Probabilistic Arithmetic Automata and Their Applications. - Tobias Marschall; Inke Herms; Hans-Michael Kaltenbach; Sven Rahmann (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)