Aligning Protein Structures Using Distance Matrices and Combinatorial Optimization. - Inken Wohlers; Lars Petzold; Francisco S. Domingues; Gunnar W. Klau (GCB, 2009)

PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation. - Inken Wohlers; Lars Petzold; Francisco S. Domingues; Gunnar W. Klau (BMC Bioinform., 2009)

Towards optimal alignment of protein structure distance matrices. - Inken Wohlers; Francisco S. Domingues; Gunnar W. Klau (Bioinform., 2010)

Sparsifying Distance Matrices for Protein-Protein Structure Alignments. - Antonio Mucherino; Inken Wohlers; Gunnar W. Klau; Rumen Andonov (CTW, 2011)

Algorithm engineering for optimal alignment of protein structure distance matrices. - Inken Wohlers; Rumen Andonov; Gunnar W. Klau (Optim. Lett., 2011)

CSA: comprehensive comparison of pairwise protein structure alignments. - Inken Wohlers; Noël Malod-Dognin; Rumen Andonov; Gunnar W. Klau (Nucleic Acids Res., 2012)

Mapping proteins in the presence of paralogs using units of coevolution. - Mohammed El-Kebir; Tobias Marschall; Inken Wohlers; Murray Patterson; Jaap Heringa; Alexander Schönhuth; Gunnar W. Klau (BMC Bioinform., 2013)

DALIX: Optimal DALI Protein Structure Alignment. - Inken Wohlers; Rumen Andonov; Gunnar W. Klau (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Exact Protein Structure Classification Using the Maximum Contact Map Overlap Metric. - Inken Wohlers; Mathilde Le Boudic-Jamin; Hristo N. Djidjev; Gunnar W. Klau; Rumen Andonov (AlCoB, 2014)

Automatic Classification of Protein Structure Using the Maximum Contact Map Overlap Metric. - Rumen Andonov; Hristo N. Djidjev; Gunnar W. Klau; Mathilde Le Boudic-Jamin; Inken Wohlers (Algorithms, 2015)

Sequencing technologies and hardware-accelerated parallel computing transform computational genomics research. - Michael Olbrich; Lennart Bartels; Inken Wohlers (Frontiers Bioinform., 2024)