Determining Malignancy of Brain Tumors by Analysis of Vessel Shape. - Elizabeth Bullitt; Inkyung Jung; Keith E. Muller; Guido Gerig; Stephen R. Aylward; Sarang C. Joshi; J. Keith Smith; Weili Lin; Matthew G. Ewend (MICCAI (2), 2004)

Analyzing attributes of vessel populations. - Elizabeth Bullitt; Keith E. Muller; Inkyung Jung; Weili Lin; Stephen R. Aylward (Medical Image Anal., 2005)

Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection. - Inkyung Jung; Jaehyung Lee 001; Soo-Young Lee; Dongsup Kim (BMC Bioinform., 2008)

SIMPRO: simple protein homology detection method by using indirect signals. - Inkyung Jung; Dongsup Kim (Bioinform., 2009)

PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship. - Inkyung Jung; Akihisa Matsuyama; Minoru Yoshida; Dongsup Kim (BMC Bioinform., 2010)

Chromatin architecture reorganization during stem cell differentiation Open. - Jesse R. Dixon; Inkyung Jung; Siddarth Selvaraj; Yin Shen; Jessica E. Antosiewicz-Bourget; Ahyoung Lee; Zhen Ye; Audrey Kim; Nisha Rajagopal; Wei Xie; Yarui Diao; Jing Liang; et al. (Nat., 2015)

3DIV: A 3D-genome Interaction Viewer and database. - Dongchan Yang; Insu Jang; Jinhyuk Choi; Minseo Kim; Andrew J. Lee; Hyun-Woong Kim; Junghyun Eom; Dongsup Kim; Inkyung Jung; Byungwook Lee (Nucleic Acids Res., 2018)

A new class of constitutively active super-enhancers is associated with fast recovery of 3D chromatin loops. - Jayoung Ryu; Hyun-Woong Kim; Dongchan Yang; Andrew J. Lee; Inkyung Jung (BMC Bioinform., 2019)

Modified spatial scan statistics using a restricted likelihood ratio for ordinal outcome data. - Myeonggyun Lee; Inkyung Jung (Comput. Stat. Data Anal., 2019)

3DIV update for 2021: a comprehensive resource of 3D genome and 3D cancer genome. - Kyukwang Kim; Insu Jang; Mooyoung Kim; Jinhyuk Choi; Minseo Kim; Byungwook Lee; Inkyung Jung (Nucleic Acids Res., 2021)

scHyena: Foundation Model for Full-Length Single-Cell RNA-Seq Analysis in Brain. - Gyutaek Oh; Baekgyu Choi; Inkyung Jung; Jong Chul Ye (CoRR, 2023)

GEM-Finder: Dissecting GWAS Variants via Long-Range Interacting Cis-Regulatory Elements with Differentiationspecific Genes. - Gyeongsik Park; Andrew J. Lee; Inkyung Jung (RECOMB, 2025)

scMamba: A Pre-Trained Model for Single-Nucleus RNA Sequencing Analysis in Neurodegenerative Disorders. - Gyutaek Oh; Baekgyu Choi; Seyoung Jin; Inkyung Jung; Jong Chul Ye (CoRR, 2025)