Soft-core potentials in thermodynamic integration: Comparing one- and two-step transformations. - Thomas Steinbrecher; InSuk Joung; David A. Case (J. Comput. Chem., 2011)

Structure-based protein folding type classification and folding rate prediction. - Balachandran Manavalan; Kunihiro Kuwajima; InSuk Joung; Jooyoung Lee 002 (BIBM, 2015)

Sigma-RF: prediction of the variability of spatial restraints in template-based modeling by random forest. - Juyong Lee; Kiho Lee; InSuk Joung; Keehyoung Joo; Bernard R. Brooks; Jooyoung Lee 002 (BMC Bioinform., 2015)

Conformational Space Annealing explained: A general optimization algorithm, with diverse applications. - InSuk Joung; Jong Yun Kim; Steven P. Gross; Keehyoung Joo; Jooyoung Lee 002 (Comput. Phys. Commun., 2018)

Application of conformational space annealing to the protein structure modeling using cryo-EM maps. - Jimin Park; InSuk Joung; Keehyoung Joo; Jooyoung Lee 002 (J. Comput. Chem., 2023)

DeepFold: enhancing protein structure prediction through optimized loss functions, improved template features, and re-optimized energy function. - Jae-Won Lee; Jong-Hyun Won; Seonggwang Jeon; Yujin Choo; Yubin Yeon; Jin-Seon Oh; Minsoo Kim; Seonhwa Kim; InSuk Joung; Cheongjae Jang; Sung Jong Lee; Tae Hyun Kim; et al. (Bioinform., 2023)