The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism. - Intawat Nookaew; Michael C. Jewett; Asawin Meechai; Chinae Thammarongtham; Kobkul Laoteng; Supapon Cheevadhanarak; Jens Nielsen; Sakarindr Bhumiratana (BMC Syst. Biol., 2008)

BioMet Toolbox: genome-wide analysis of metabolism. - Marija Cvijovic; Roberto Olivares-Hernández; Rasmus Agren; Niklas Dahr; Wanwipa Vongsangnak; Intawat Nookaew; Kiran Raosaheb Patil; Jens Nielsen (Nucleic Acids Res., 2010)

Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials. - Luis Caspeta; Saeed Shoaie; Rasmus Agren; Intawat Nookaew; Jens Nielsen (BMC Syst. Biol., 2012)

Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT. - Rasmus Agren; Sergio Bordel; Adil Mardinoglu; Natapol Pornputtapong; Intawat Nookaew; Jens Nielsen (PLoS Comput. Biol., 2012)

FANTOM: Functional and taxonomic analysis of metagenomes. - Kemal Sanli; Fredrik H. Karlsson; Intawat Nookaew; Jens Nielsen (BMC Bioinform., 2013)

Integrated analysis, transcriptome-lipidome, reveals the effects of INO-level (INO2 and INO4) on lipid metabolism in yeast. - Pramote Chumnanpuen; Intawat Nookaew; Jens Nielsen (BMC Syst. Biol., 2013)

Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling. - Tobias Österlund; Intawat Nookaew; Sergio Bordel; Jens Nielsen (BMC Syst. Biol., 2013)

The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum. - Rasmus Agren; Liming Liu; Saeed Shoaie; Wanwipa Vongsangnak; Intawat Nookaew; Jens Nielsen (PLoS Comput. Biol., 2013)

yStreX: yeast stress expression database. - Kwanjeera Wanichthanarak; Intawat Nookaew; Dina Petranovic (Database J. Biol. Databases Curation, 2014)

Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction. - Ibrahim E. El-Semman; Fredrik H. Karlsson; Saeed Shoaie; Intawat Nookaew; Taysir Hassan A. Soliman; Jens Nielsen (BMC Syst. Biol., 2014)

BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data. - Manuel Garcia-Albornoz; Subazini Thankaswamy-Kosalai; Avlant Nilsson; Leif Väremo; Intawat Nookaew; Jens Nielsen (Nucleic Acids Res., 2014)

Metagenomic Data Utilization and Analysis (MEDUSA) and Construction of a Global Gut Microbial Gene Catalogue. - Fredrik H. Karlsson; Intawat Nookaew; Jens Nielsen (PLoS Comput. Biol., 2014)

A dedicated database system for handling multi-level data in systems biology. - Natapol Pornputtapong; Kwanjeera Wanichthanarak; Avlant Nilsson; Intawat Nookaew; Jens Nielsen (Source Code Biol. Medicine, 2014)

Human metabolic atlas: an online resource for human metabolism. - Natapol Pornputtapong; Intawat Nookaew; Jens Nielsen (Database J. Biol. Databases Curation, 2015)

DNA2FACE: An approach to correlating 3D facial structure and DNA. - Nisha Srinivas; Ryan Tokola; Aravind K. Mikkilineni; Intawat Nookaew; Michael R. Leuze; Christopher Boehnen (IJCB, 2017)

PanViz: interactive visualization of the structure of functionally annotated pangenomes. - Thomas Lin Pedersen; Intawat Nookaew; David Wayne Ussery; Maria Månsson (Bioinform., 2017)

Assessment of genome annotation using gene function similarity within the gene neighborhood. - Se-Ran Jun; Intawat Nookaew; Loren J. Hauser; Andrey Gorin (BMC Bioinform., 2017)

Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us? - Se-Ran Jun; Trudy M. Wassenaar; Visanu Wanchai; Preecha Patumcharoenpol; Intawat Nookaew; David Wayne Ussery (BMC Bioinform., 2017)

dBBQs: dataBase of Bacterial Quality scores. - Visanu Wanchai; Preecha Patumcharoenpol; Intawat Nookaew; David Wayne Ussery (BMC Bioinform., 2017)

CReSIL: accurate identification of extrachromosomal circular DNA from long-read sequences. - Visanu Wanchai; Piroon Jenjaroenpun; Thongpan Leangapichart; Gerard Arrey; Charles M. Burnham; Maria C. Tümmler; Jesus Delgado-Calle; Birgitte Regenberg; Intawat Nookaew (Briefings Bioinform., 2022)

CAIM: coverage-based analysis for identification of microbiome. - Daniel A Acheampong; Piroon Jenjaroenpun; Thidathip Wongsurawat; Alongkorn Kurilung; Yotsawat Pomyen; Sangam Kandel; Pattapon Kunadirek; Natthaya Chuaypen; Kanthida Kusonmano; Intawat Nookaew (Briefings Bioinform., 2024)