MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis. - Daehee Hwang; Ning Zhang; Hookeun Lee; Eugene Yi; Hui Zhang; Inyoul Y. Lee; Leroy Hood; Ruedi Aebersold (Bioinform., 2008)

The Prion Disease Database: a comprehensive transcriptome resource for systems biology research in prion diseases. - Nils Gehlenborg; Daehee Hwang; Inyoul Y. Lee; Hyuntae Yoo; David Baxter; Brianne Petritis; Rose Pitstick; Bruz Marzolf; Stephen J. DeArmond; George Carlson; Leroy Hood (Database J. Biol. Databases Curation, 2009)

Prequips - an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data. - Nils Gehlenborg; Wei Yan; Inyoul Y. Lee; Hyuntae Yoo; Kay Nieselt; Daehee Hwang; Ruedi Aebersold; Leroy Hood (Bioinform., 2009)

Principal network analysis: identification of subnetworks representing major dynamics using gene expression data. - Yongsoo Kim; Taek-Kyun Kim; Yungu Kim; Jiho Yoo; Sungyong You; Inyoul Y. Lee; George Carlson; Leroy Hood; Seungjin Choi; Daehee Hwang (Bioinform., 2011)