Global optimization using bad derivatives: Derivative-free method for molecular energy minimization. - Ioan Andricioaei; John E. Straub (J. Comput. Chem., 1998)

Exploiting Tsallis Statistics. - John E. Straub; Ioan Andricioaei (Computational Molecular Dynamics, 1999)

An improved method for nonbonded list generation: Rapid determination of near-neighbor pairs. - Robert J. Petrella; Ioan Andricioaei; Bernard R. Brooks; Martin Karplus (J. Comput. Chem., 2003)

Simulated Annealing Methods in Protein Folding. - Ioan Andricioaei; John E. Straub (Encyclopedia of Optimization, 2009)

Force-Field-Dependent DNA Breathing Dynamics: A Case Study of Hoogsteen Base Pairing in A6-DNA. - Sharon Emily Stone; Dhiman Ray; Ioan Andricioaei (J. Chem. Inf. Model., 2022)