TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. - Thanasis Vergoulis; Ioannis S. Vlachos; Panagiotis Alexiou; George Georgakilas; Manolis Maragkakis; Martin Reczko; Stefanos Gerangelos; Nectarios Koziris; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2012)

DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. - Ioannis S. Vlachos; Nikos Kostoulas; Thanasis Vergoulis; Georgios K. Georgakilas; Martin Reczko; Manolis Maragkakis; Maria D. Paraskevopoulou; Kostantinos Prionidis; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2012)

DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. - Maria D. Paraskevopoulou; Georgios K. Georgakilas; Nikos Kostoulas; Ioannis S. Vlachos; Thanasis Vergoulis; Martin Reczko; Christos Filippidis; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2013)

BiDaS: a web-based Monte Carlo BioData Simulator based on sequence/feature characteristics. - Maria D. Paraskevopoulou; Ioannis S. Vlachos; Emmanouil Athanasiadis; George M. Spyrou (Nucleic Acids Res., 2013)

Smart health: A context-aware health paradigm within smart cities. - Agusti Solanas; Constantinos Patsakis; Mauro Conti; Ioannis S. Vlachos; Victoria Ramos; Francisco Falcone; Octavian Postolache; Pablo A. Pérez-Martínez; Roberto Di Pietro; Despina N. Perrea; Antoni Martínez-Ballesté (IEEE Commun. Mag., 2014)

TarMiner: automatic extraction of miRNA targets from literature. - Rodothea-Myrsini Tsoupidi; Ilias Kanellos; Thanasis Vergoulis; Ioannis S. Vlachos; Artemis G. Hatzigeorgiou; Theodore Dalamagas 001 (SSDBM, 2015)

DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA: mRNA interactions. - Ioannis S. Vlachos; Maria D. Paraskevopoulou; Dimitra Karagkouni; Georgios K. Georgakilas; Thanasis Vergoulis; Ilias Kanellos; Ioannis-Laertis Anastasopoulos; Sofia Maniou; Konstantina Karathanou; Despina Kalfakakou; Athanasios Fevgas; Theodore Dalamagas 001; et al. (Nucleic Acids Res., 2015)

DIANA-miRPath v3.0: deciphering microRNA function with experimental support. - Ioannis S. Vlachos; Konstantinos Zagganas; Maria D. Paraskevopoulou; Georgios K. Georgakilas; Dimitra Karagkouni; Thanasis Vergoulis; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2015)

DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. - Georgios K. Georgakilas; Ioannis S. Vlachos; Konstantinos Zagganas; Thanasis Vergoulis; Maria D. Paraskevopoulou; Ilias Kanellos; Panayiotis Tsanakas; Dimitris Dellis; Athanasios Fevgas; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2016)

DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. - Maria D. Paraskevopoulou; Ioannis S. Vlachos; Dimitra Karagkouni; Georgios K. Georgakilas; Ilias Kanellos; Thanasis Vergoulis; Konstantinos Zagganas; Panayiotis Tsanakas; Evangelos Floros; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2016)

DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. - Ioannis S. Vlachos; Thanasis Vergoulis; Maria D. Paraskevopoulou; Filopoimin Lykokanellos; Georgios K. Georgakilas; Penny Georgiou; Serafeim Chatzopoulos; Dimitra Karagkouni; Foteini Christodoulou; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2016)

BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets. - Konstantinos Zagganas; Thanasis Vergoulis; Maria D. Paraskevopoulou; Ioannis S. Vlachos; Spiros Skiadopoulos; Theodore Dalamagas 001 (BMC Bioinform., 2017)

DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions. - Dimitra Karagkouni; Maria D. Paraskevopoulou; Serafeim Chatzopoulos; Ioannis S. Vlachos; Spyros Tastsoglou; Ilias Kanellos; Dimitris Papadimitriou; Ioannis Kavakiotis; Sofia Maniou; Giorgos Skoufos; Thanasis Vergoulis; Theodore Dalamagas 001; et al. (Nucleic Acids Res., 2018)

Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. - Thomas Desvignes; Phillipe Loher; Karen Eilbeck; Jeffery Ma; Gianvito Urgese; Bastian Fromm; Jason Sydes; Ernesto Aparicio-Puerta; Víctor Barrera; Roderic Espín; Florian Thibord; Xavier Bofill-De Ros; et al. (Bioinform., 2020)

DIANA-miTED: a microRNA tissue expression database. - Ioannis Kavakiotis; Athanasios Alexiou; Spyros Tastsoglou; Ioannis S. Vlachos; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2022)

PanomiR: a systems biology framework for analysis of multi-pathway targeting by miRNAs. - Pourya Naderi Yeganeh; Yue Y. Teo; Dimitra Karagkouni; Yered Pita-Juárez; Sarah L. Morgan; Frank J. Slack; Ioannis S. Vlachos; Winston A. Hide (Briefings Bioinform., 2023)

Prediction of disease-free survival for precision medicine using cooperative learning on multi-omic data. - Georg Hahn; Dmitry Prokopenko; Julian Hecker; Sharon Marie Lutz; Kristina Mullin; Leinal Sejour; Winston Hide; Ioannis S. Vlachos; Stacia Desantis; Rudolph E. Tanzi; Christoph Lange 003 (Briefings Bioinform., 2024)