Parametric process synthesis for general nonlinear models. - Ipsita Banerjee; Marianthi G. Ierapetritou (Comput. Chem. Eng., 2003)

Model Independent Parametric Decision Making. - Ipsita Banerjee; Marianthi G. Ierapetritou (Ann. Oper. Res., 2004)

Shape Reconstruction Methods for Nonconvex Feasibility Analysis. - Ipsita Banerjee; Marianthi G. Ierapetritou (Encyclopedia of Optimization, 2009)

An integer programming formulation to identify the sparse network architecture governing differentiation of embryonic stem cells. - Ipsita Banerjee; Spandan Maiti; Natesh Parashurama; Martin L. Yarmush (Bioinform., 2010)

Computationally efficient black-box modeling for feasibility analysis. - Ipsita Banerjee; Siladitya Pal; Spandan Maiti (Comput. Chem. Eng., 2010)

An integer optimization algorithm for robust identification of non-linear gene regulatory networks. - Nishanth G. Chemmangattuvalappil; Keith Task; Ipsita Banerjee (BMC Syst. Biol., 2012)

Analysis of alternative signaling pathways of endoderm induction of human embryonic stem cells identifies context specific differences. - Shibin Mathew; Maria Jaramillo; Xinan Zhang; Li Zhang; Alejandro Soto-Gutiérrez; Ipsita Banerjee (BMC Syst. Biol., 2012)

Regulatory interactions maintaining self-renewal of human embryonic stem cells as revealed through a systems analysis of PI3K/AKT pathway. - Shibin Mathew; Sankaramanivel Sundararaj; Hikaru Mamiya; Ipsita Banerjee (Bioinform., 2014)

Quantitative analysis of robustness of dynamic response and signal transfer in insulin mediated PI3K/AKT pathway. - Shibin Mathew; Ipsita Banerjee (Comput. Chem. Eng., 2014)

APT-MCMC, a C++/Python implementation of Markov Chain Monte Carlo for parameter identification. - Li Ang Zhang; Alisa Urbano; Gilles Clermont; David Swigon; Ipsita Banerjee; Robert S. Parker (Comput. Chem. Eng., 2018)