Modelling regulatory pathways in E. coli from time series expression profiles. - Irene M. Ong; Jeremy D. Glasner; David Page (ISMB, 2002)

FOIL-D: Efficiently Scaling FOIL for Multi-relational Data Mining of Large Datasets. - Joseph Bockhorst; Irene M. Ong (ILP, 2004)

Mode Directed Path Finding. - Irene M. Ong; Inês de Castro Dutra; David Page; Vítor Santos Costa (ECML, 2005)

Inferring Regulatory Networks from Time Series Expression Data and Relational Data Via Inductive Logic Programming. - Irene M. Ong; Scott E. Topper; C. David Page Jr.; Vítor Santos Costa (ILP, 2006)

Experimental Design of Time Series Data for Learning from Dynamic Bayesian Networks. - C. David Page Jr.; Irene M. Ong (Pacific Symposium on Biocomputing, 2006)

Change of Representation for Statistical Relational Learning. - Jesse Davis; Irene M. Ong; Jan Struyf; Elizabeth S. Burnside; David Page; Vítor Santos Costa (IJCAI, 2007)

A Problog Model for Analyzing Gene Regulatory Networks. - António Gonçalves; Irene M. Ong; Jeffrey A. Lewis; Vítor Santos Costa (ILP (Late Breaking Papers), 2012)

Towards Using Probabilities and Logic to Model Regulatory Networks. - António Gonçalves; Irene M. Ong; Jeffrey A. Lewis; Vítor Santos Costa (CBMS, 2014)

Discovering Differentially Expressed Genes in Yeast Stress Data. - António Gonçalves; Irene M. Ong; Jeffrey A. Lewis; Vítor Santos Costa (CBMS, 2014)

Discriminatory power of common genetic variants in personalized breast cancer diagnosis. - Yirong Wu; Craig K. Abbey; Jie Liu 006; Irene M. Ong; Peggy L. Peissig; Adedayo A. Onitilo; Jun Fan; Ming Yuan 001; Elizabeth S. Burnside (Image Perception, Observer Performance, and Technology Assessment, 2016)

Structure-Leveraged Methods in Breast Cancer Risk Prediction. - Jun Fan; Yirong Wu; Ming Yuan 001; David Page; Jie Liu 006; Irene M. Ong; Peggy L. Peissig; Elizabeth S. Burnside (J. Mach. Learn. Res., 2016)

MixTwice: large-scale hypothesis testing for peptide arrays by variance mixing. - Zihao Zheng; Aisha M. Mergaert; Irene M. Ong; Miriam A. Shelef; Michael A. Newton (Bioinform., 2021)