Evaluation of a knowledge-based potential of mean force for scoring docked protein-ligand complexes. - Irene Nobeli; John B. O. Mitchell; Alexander Alex; Janet M. Thornton (J. Comput. Chem., 2001)

PROCOGNATE: a cognate ligand domain mapping for enzymes. - Matthew Bashton; Irene Nobeli; Janet M. Thornton (Nucleic Acids Res., 2008)

Mapping Human Metabolic Pathways in the Small Molecule Chemical Space. - Antonio Macchiarulo; Janet M. Thornton; Irene Nobeli (J. Chem. Inf. Model., 2009)

SERAPhiC: A Benchmark for in Silico Fragment-Based Drug Design. - Angelo D. Favia; Giovanni Bottegoni; Irene Nobeli; Paola Bisignano; Andrea Cavalli (J. Chem. Inf. Model., 2011)

Visualisation of variable binding pockets on protein surfaces by probabilistic analysis of related structure sets. - Paul Ashford; David S. Moss; Alexander Alex; Siew K. Yeap; Alice Povia; Irene Nobeli; Mark A. Williams (BMC Bioinform., 2012)

A text-mining system for extracting metabolic reactions from full-text articles. - Jan Czarnecki; Irene Nobeli; Adrian M. Smith; Adrian J. Shepherd (BMC Bioinform., 2012)

baerhunter: an R package for the discovery and analysis of expressed non-coding regions in bacterial RNA-seq data. - A Ozuna; D. Liberto; R. M. Joyce; K. B. Arnvig; Irene Nobeli (Bioinform., 2020)

flexiMAP: a regression-based method for discovering differential alternative polyadenylation events in standard RNA-seq data. - Krzysztof J. Szkop; David S. Moss; Irene Nobeli (Bioinform., 2021)