Motif Discovery from Large Number of Sequences: A Case Study with Disease Resistance Genes in Arabidopsos thaliana. - Irfan Gunduz; Sihui Zhao; Mehmet M. Dalkilic; Sun Kim (METMBS, 2003)

AUGUSTUS: ab initio prediction of alternative transcripts. - Mario Stanke; Oliver Keller; Irfan Gunduz; Alec Hayes; Stephan Waack; Burkhard Morgenstern (Nucleic Acids Res., 2006)