Improving gene set analysis of microarray data by SAM-GS. - Irina Dinu; John D. Potter; Thomas F. Mueller; Qi Liu; Adeniyi J. Adewale; Gian S. Jhangri; Gunilla Einecke; Konrad S. Famulski; Philip Halloran; Yutaka Yasui (BMC Bioinform., 2007)

Comparative evaluation of gene-set analysis methods. - Qi Liu; Irina Dinu; Adeniyi J. Adewale; John D. Potter; Yutaka Yasui (BMC Bioinform., 2007)

Pathway Analysis of Microarray Data via Regression. - Adeniyi J. Adewale; Irina Dinu; John D. Potter; Qi Liu; Yutaka Yasui (J. Comput. Biol., 2008)

Gene-set analysis and reduction. - Irina Dinu; John D. Potter; Thomas F. Mueller; Qi Liu; Adeniyi J. Adewale; Gian S. Jhangri; Gunilla Einecke; Konrad S. Famulski; Philip Halloran; Yutaka Yasui (Briefings Bioinform., 2009)

Linear combination test for gene set analysis of a continuous phenotype. - Irina Dinu; Xiaoming Wang; Linda E. Kelemen; Shabnam Vatanpour; Saumyadipta Pyne (BMC Bioinform., 2013)

Gene set enrichment analysis for multiple continuous phenotypes. - Xiaoming Wang; Saumyadipta Pyne; Irina Dinu (BMC Bioinform., 2014)

Association between bivariate expression of key oncogenes and metabolic phenotypes of patients with prostate cancer. - Elham Khodayari Moez; Saumyadipta Pyne; Irina Dinu (Comput. Biol. Medicine, 2018)

Longitudinal linear combination test for gene set analysis. - Elham Khodayari Moez; Morteza Hajihosseini; Jeffrey L. Andrews; Irina Dinu (BMC Bioinform., 2019)

Gene set analysis and reduction for a continuous phenotype: Identifying markers of birth weight variation based on embryonic stem cells and immunologic signatures. - Shabnam Vatanpour; Saumyadipta Pyne; Ana Paula Leite; Irina Dinu (Comput. Biol. Medicine, 2019)

Machine learning-based evaluation of prognostic factors for mortality and relapse in patients with acute lymphoblastic leukemia: a comparative simulation study. - Zahra Mehrbakhsh; Roghayyeh Hassanzadeh; Nasser Behnampour; Leili Tapak; Ziba Zarrin; Salman Khazaei; Irina Dinu (BMC Medical Informatics Decis. Mak., 2024)

GSHAPA: Gene Set Analysis for Single-Cell RNAseq Using Random Forest and SHAP Values. - Sara Khademioureh; Irina Dinu; Sergio Peignier (SAC, 2025)