An Efficient Design of a Reversible Barrel Shifter. - Irina Hashmi; Hafiz Md. Hasan Babu (VLSI Design, 2010)

Refinement of docked protein complex structures using evolutionary traces. - Bahar Akbal-Delibas; Irina Hashmi; Amarda Shehu; Nurit Haspel (BIBM Workshops, 2011)

Protein docking with information on evolutionary conserved interfaces. - Irina Hashmi; Bahar Akbal-Delibas; Nurit Haspel; Amarda Shehu (BIBM Workshops, 2011)

A basin hopping algorithm for protein-protein docking. - Irina Hashmi; Amarda Shehu (BIBM, 2012)

Sampling low-energy protein-protein configurations with basin hopping. - Irina Hashmi; Amarda Shehu (BIBM Workshops, 2012)

Basin Hopping as a General and Versatile Optimization Framework for the Characterization of Biological Macromolecules. - Brian S. Olson; Irina Hashmi; Kevin Molloy; Amarda Shehu (Adv. Artif. Intell., 2012)

An Evolutionary conservation-Based Method for Refining and Reranking protein Complex Structures. - Bahar Akbal-Delibas; Irina Hashmi; Amarda Shehu; Nurit Haspel (J. Bioinform. Comput. Biol., 2012)

Guiding protein docking with Geometric and Evolutionary Information. - Irina Hashmi; Bahar Akbal-Delibas; Nurit Haspel; Amarda Shehu (J. Bioinform. Comput. Biol., 2012)

Protein-protein Docking Using Information from Native Interaction Interfaces. - Irina Hashmi; Amarda Shehu (BCB, 2013)

Informatics-driven Protein-protein Docking. - Irina Hashmi; Amarda Shehu (BCB, 2013)

Knowledge-based search and multi-objective filters: proposed structural models of GPCR dimerization. - Irina Hashmi; Daniel Veltri; Nadine Kabbani; Amarda Shehu (BCB, 2014)

idDock+: Integrating Machine Learning in Probabilistic Search for Protein-Protein Docking. - Irina Hashmi; Amarda Shehu (J. Comput. Biol., 2015)