CoMFA-based comparison of two models of binding site on adenosine A1 receptor. - Irini A. Doytchinova (J. Comput. Aided Mol. Des., 2001)

JenPep: a database of quantitative functional peptide data for immunology. - Martin J. Blythe; Irini A. Doytchinova; Darren R. Flower (Bioinform., 2002)

A Comparative Molecular Similarity Index Analysis (CoMSIA) study identifies an HLA-A2 binding supermotif. - Irini A. Doytchinova; Darren R. Flower (J. Comput. Aided Mol. Des., 2002)

Towards the in silico identification of class II restricted T-cell epitopes: a partial least squares iterative self-consistent algorithm for affinity prediction. - Irini A. Doytchinova; Darren R. Flower (Bioinform., 2003)

JenPep: A Novel Computational Information Resource for Immunobiology and Vaccinology. - Helen M. McSparron; Martin J. Blythe; Christianna Zygouri; Irini A. Doytchinova; Darren R. Flower (J. Chem. Inf. Comput. Sci., 2003)

MHCPred: a server for quantitative prediction of peptide-MHC binding. - Pingping Guan; Irini A. Doytchinova; Christianna Zygouri; Darren R. Flower (Nucleic Acids Res., 2003)

Towards the chemometric dissection of peptide - HLA-A*0201 binding affinity: comparison of local and global QSAR models. - Irini A. Doytchinova; Valerie Walshe; Persephone Borrow; Darren R. Flower (J. Comput. Aided Mol. Des., 2005)

In Silico Prediction of Peptide Binding Affinity to Class I Mouse Major Histocompatibility Complexes: A Comparative Molecular Similarity Index Analysis (CoMSIA) Study. - Channa K. Hattotuwagama; Irini A. Doytchinova; Darren R. Flower (J. Chem. Inf. Model., 2005)

EpiJen: a server for multistep T cell epitope prediction. - Irini A. Doytchinova; Pingping Guan; Darren R. Flower (BMC Bioinform., 2006)

Toward Prediction of Class II Mouse Major Histocompatibility Complex Peptide Binding Affinity: in Silico Bioinformatic Evaluation Using Partial Least Squares, a Robust Multivariate Statistical Technique. - Channa K. Hattotuwagama; Christopher P. Toseland; Pingping Guan; Debra J. Taylor; Shelley L. Hemsley; Irini A. Doytchinova; Darren R. Flower (J. Chem. Inf. Model., 2006)

VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines. - Irini A. Doytchinova; Darren R. Flower (BMC Bioinform., 2007)

Predicting Class I Major Histocompatibility Complex (MHC) Binders Using Multivariate Statistics: Comparison of Discriminant Analysis and Multiple Linear Regression. - Irini A. Doytchinova; Darren R. Flower (J. Chem. Inf. Model., 2007)

EpiTOP - a proteochemometric tool for MHC class II binding prediction. - Ivan Dimitrov; Panayot Garnev; Darren R. Flower; Irini A. Doytchinova (Bioinform., 2010)

AllerTOP - a server for in silico prediction of allergens. - Ivan Dimitrov; Darren R. Flower; Irini A. Doytchinova (BMC Bioinform., 2013)

Quantitative Prediction of Peptide Binding to HLA-DP1 Protein. - Stefan Ivanov; Ivan Dimitrov; Irini A. Doytchinova (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

AllergenFP: allergenicity prediction by descriptor fingerprints. - Ivan Dimitrov; Lyudmila Naneva; Irini A. Doytchinova; Ivan Bangov (Bioinform., 2014)

Proteochemometrics-Based Prediction of Peptide Binding to HLA-DP Proteins. - Ventsislav Yordanov; Ivan Dimitrov; Irini A. Doytchinova (J. Chem. Inf. Model., 2018)

Predicting Immunogenicity Risk in Biopharmaceuticals. - Nikolet Doneva; Irini A. Doytchinova; Ivan Dimitrov (Symmetry, 2021)