The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. - Torsten Crass; Iris Antes; Rico Basekow; Peer Bork; Christian Buning; Maik Christensen; Holger Claussen 002; Christian Ebeling; Peter Ernst; Valérie Gailus-Durner; Karl-Heinz Glatting; Rolf Gohla; et al. (Bioinform., 2004)

POEM: Parameter Optimization Using Ensemble Methods: Application to Target Specific Scoring Functions. - Iris Antes; Christian Merkwirth; Thomas Lengauer (J. Chem. Inf. Model., 2005)

DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations. - Iris Antes; Shirley W. I. Siu; Thomas Lengauer (ISMB (Supplement of Bioinformatics), 2006)

Predicting MHC class I epitopes in large datasets. - Kirsten Roomp; Iris Antes; Thomas Lengauer (BMC Bioinform., 2010)

Quantitative Analysis of the Association Angle between T-cell Receptor Vα/Vβ Domains Reveals Important Features for Epitope Recognition. - Thomas Hoffmann 004; Angela M. Krackhardt; Iris Antes (PLoS Comput. Biol., 2015)

Amber-Compatible Parametrization Procedure for Peptide-like Compounds: Application to 1, 4- and 1, 5-Substituted Triazole-Based Peptidomimetics. - Antoine Marion; Jerzy Góra; Oliver Kracker; Tanja Fröhr; Rafal Latajka; Norbert Sewald; Iris Antes (J. Chem. Inf. Model., 2018)

Dynamic Docking of Macrocycles in Bound and Unbound Protein Structures with DynaDock. - Maximilian Meixner; Martin Zachmann; Sebastian Metzler; Jonathan Scheerer; Martin Zacharias; Iris Antes (J. Chem. Inf. Model., 2022)

Benchmarking biomolecular force field-based Zn2+ for mono- and bimetallic ligand binding sites. - Okke Melse; Iris Antes; Ville R. I. Kaila; Martin Zacharias (J. Comput. Chem., 2023)