Chain functions and scoring functions in genetic networks. - Irit Gat-Viks; Ron Shamir (ISMB (Supplement of Bioinformatics), 2003)

Scoring clustering solutions by their biological relevance. - Irit Gat-Viks; Roded Sharan; Ron Shamir (Bioinform., 2003)

Modeling and Analysis of Heterogeneous Regulation in Biological Networks. - Irit Gat-Viks; Amos Tanay; Ron Shamir (J. Comput. Biol., 2004)

The Factor Graph Network Model for Biological Systems. - Irit Gat-Viks; Amos Tanay; Daniela Raijman; Ron Shamir (RECOMB, 2005)

A Probabilistic Methodology for Integrating Knowledge and Experiments on Biological Networks. - Irit Gat-Viks; Amos Tanay; Daniela Raijman; Ron Shamir (J. Comput. Biol., 2006)

Reconstructing Chain Functions in Genetic Networks. - Irit Gat-Viks; Richard M. Karp; Ron Shamir; Roded Sharan (SIAM J. Discret. Math., 2006)

Computational analysis of molecular networks: modeling and reconstruction - Irit Gat-Viks (2007)

A Faster Algorithm for RNA Co-folding. - Michal Ziv-Ukelson; Irit Gat-Viks; Ydo Wexler; Ron Shamir (WABI, 2008)

Evidence for Gene-Specific Rather Than Transcription Rate-Dependent Histone H3 Exchange in Yeast Coding Regions. - Irit Gat-Viks; Martin Vingron (PLoS Comput. Biol., 2009)

A Faster Algorithm for Simultaneous Alignment and Folding of RNA. - Michal Ziv-Ukelson; Irit Gat-Viks; Ydo Wexler; Ron Shamir (J. Comput. Biol., 2010)

Understanding Gene Sequence Variation in the Context of Transcription Regulation in Yeast. - Irit Gat-Viks; Renana Meller; Martin Kupiec; Ron Shamir (RECOMB, 2011)

Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data. - Ewa Szczurek; Florian Markowetz; Irit Gat-Viks; Przemyslaw Biecek; Jerzy Tiuryn; Martin Vingron (BMC Bioinform., 2011)

A minimum-labeling approach for reconstructing protein networks across multiple conditions. - Arnon Mazza; Irit Gat-Viks; Hesso Farhan; Roded Sharan (Algorithms Mol. Biol., 2014)

Elucidating Influenza Inhibition Pathways via Network Reconstruction. - Arnon Mazza; Irit Gat-Viks; Roded Sharan (J. Comput. Biol., 2014)

Dissecting Dynamic Genetic Variation That Controls Temporal Gene Response in Yeast. - Avital Brodt; Maya Botzman; Eyal David; Irit Gat-Viks (PLoS Comput. Biol., 2014)

A Novel Probabilistic Methodology for eQTL Analysis of Signaling Networks. - Roni Wilentzik; Irit Gat-Viks (RECOMB, 2015)

CoD: inferring immune-cell quantities related to disease states. - Amit Frishberg; Yael Steuerman; Irit Gat-Viks (Bioinform., 2015)

Revealing the Genetic Basis of Immune Traits in the Absence of Experimental Immunophenotyping. - Yael Steuerman; Irit Gat-Viks (RECOMB, 2016)

ImmQuant: a user-friendly tool for inferring immune cell-type composition from gene-expression data. - Amit Frishberg; Avital Brodt; Yael Steuerman; Irit Gat-Viks (Bioinform., 2016)

Exploiting Gene-Expression Deconvolution to Probe the Genetics of the Immune System. - Yael Steuerman; Irit Gat-Viks (PLoS Comput. Biol., 2016)

Inferring cellular heterogeneity of associations from single cell genomics. - Maya Levy; Amit Frishberg; Irit Gat-Viks (Bioinform., 2020)