RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. - Heladia Salgado; Socorro Gama-Castro; Martín Peralta-Gil; Edgar Díaz-Peredo; Fabiola Sánchez-Solano; Alberto Santos-Zavaleta; Irma Martínez-Flores; Verónica Jiménez-Jacinto; César Bonavides-Martínez; Juan Segura-Salazar; Agustino Martínez-Antonio; Julio Collado-Vides (Nucleic Acids Res., 2006)

NLP-Based Curation of Bacterial Regulatory Networks. - Carlos Rodríguez Penagos; Heladia Salgado; Irma Martínez-Flores; Julio Collado-Vides (CICLing, 2007)

Automatic reconstruction of a bacterial regulatory network using Natural Language Processing. - Carlos Rodríguez Penagos; Heladia Salgado; Irma Martínez-Flores; Julio Collado-Vides (BMC Bioinform., 2007)

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. - Socorro Gama-Castro; Verónica Jiménez-Jacinto; Martín Peralta-Gil; Alberto Santos-Zavaleta; Mónica I. Peñaloza-Spínola; Bruno Contreras-Moreira; Juan Segura-Salazar; Luis Muñiz-Rascado; Irma Martínez-Flores; Heladia Salgado; César Bonavides-Martínez; Cei Abreu-Goodger; et al. (Nucleic Acids Res., 2008)

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). - Socorro Gama-Castro; Heladia Salgado; Martín Peralta-Gil; Alberto Santos-Zavaleta; Luis Muñiz-Rascado; Hilda Solano-Lira; Verónica Jiménez-Jacinto; Verena Weiss; Jair S. García-Sotelo; Alejandra López-Fuentes; Liliana Porrón-Sotelo; Shirley Alquicira-Hernández; et al. (Nucleic Acids Res., 2011)

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. - Heladia Salgado; Martín Peralta-Gil; Socorro Gama-Castro; Alberto Santos-Zavaleta; Luis Muñiz-Rascado; Jair S. García-Sotelo; Verena Weiss; Hilda Solano-Lira; Irma Martínez-Flores; Alejandra Medina-Rivera; Gerardo Salgado-Osorio; Shirley Alquicira-Hernández; et al. (Nucleic Acids Res., 2013)

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond. - Socorro Gama-Castro; Heladia Salgado; Alberto Santos-Zavaleta; Daniela Ledezma-Tejeida; Luis Muñiz-Rascado; Jair Santiago García-Sotelo; Kevin Alquicira-Hernández; Irma Martínez-Flores; Lucia Pannier; Jaime Abraham Castro-Mondragón; Alejandra Medina-Rivera; Hilda Solano-Lira; et al. (Nucleic Acids Res., 2016)

Editorial: Women in bioinformatics. - Irma Martínez-Flores; Constanza Cárdenas Carvajal; Viviana Monje-Galvan (Frontiers Bioinform., 2024)