ON/OFF and Beyond - A Boolean Model of Apoptosis. - Rebekka Schlatter; Kathrin Schmich; Ima Avalos Vizcarra; Peter Scheurich; Thomas Sauter; Christoph Borner; Michael Ederer; Irmgard Merfort; Oliver Sawodny (PLoS Comput. Biol., 2009)

Backbone flexibility controls the activity and specificity of a protein-protein interface - specificity in snake venom metalloproteases (SVMPs). - Hannes G. Wallnoefer; Torsten Lingott; José Gutiérrez; Irmgard Merfort; Klaus R. Liedl (J. Cheminformatics, 2011)

Mining and evaluation of molecular relationships in literature. - Christian Senger; Björn A. Grüning; Anika Erxleben; Kersten Döring; Hitesh Patel; Stephan Flemming; Irmgard Merfort; Stefan Günther (Bioinform., 2012)

PyWATER: a PyMOL plug-in to find conserved water molecules in proteins by clustering. - Hitesh Patel; Björn A. Grüning; Stefan Günther; Irmgard Merfort (Bioinform., 2014)