Comparative ab initio prediction of gene structures using pair HMMs. - Irmtraud M. Meyer; Richard Durbin (Bioinform., 2002)

A linear memory algorithm for Baum-Welch training. - István Miklós; Irmtraud M. Meyer (BMC Bioinform., 2005)

A practical guide to the art of RNA gene prediction. - Irmtraud M. Meyer (Briefings Bioinform., 2007)

SimulFold: Simultaneously Inferring RNA Structures Including Pseudoknots, Alignments, and Trees Using a Bayesian MCMC Framework. - Irmtraud M. Meyer; István Miklós (PLoS Comput. Biol., 2007)

Efficient parameter training for hidden Markov models using posterior sampling training and Viterbi training - Tin Yin Lam; Irmtraud M. Meyer (CoRR, 2009)

Efficient algorithms for training the parameters of hidden Markov models using stochastic expectation maximization (EM) training and Viterbi training. - Tin Yin Lam; Irmtraud M. Meyer (Algorithms Mol. Biol., 2010)

Transat - A Method for Detecting the Conserved Helices of Functional RNA Structures, Including Transient, Pseudo-Knotted and Alternative Structures. - Nicholas J. P. Wiebe; Irmtraud M. Meyer (PLoS Comput. Biol., 2010)

e-RNA: a collection of web servers for comparative RNA structure prediction and visualisation. - Daniel Lai; Irmtraud M. Meyer (Nucleic Acids Res., 2014)

e-RNA: a collection of web-servers for the prediction and visualisation of RNA secondary structure and their functional features. - Volodymyr Tsybulskyi; Egor Semenchenko; Irmtraud M. Meyer (Nucleic Acids Res., 2023)