Dynamic Self-Organising Maps: Theory, Methods and Applications. - Arthur L. Hsu; Isaam Saeed; Saman K. Halgamuge (Foundations of Computational Intelligence (1), 2009)

Unsupervised discovery of microbial population structure within metagenomes using nucleotide base composition. - Isaam Saeed (2011)

ViQuaS: an improved reconstruction pipeline for viral quasispecies spectra generated by next-generation sequencing. - Duleepa Jayasundara; Isaam Saeed; Suhinthan Maheswararajah; Bill C. Chang; Sen-Lin Tang; Saman K. Halgamuge (Bioinform., 2015)

EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data. - Chalini D. Wijetunge; Isaam Saeed; Berin A. Boughton; Jeffrey M. Spraggins; Richard M. Caprioli; Antony Bacic; Ute Roessner; Saman K. Halgamuge (Bioinform., 2015)

Accurate reconstruction of viral quasispecies spectra through improved estimation of strain richness. - Duleepa Jayasundara; Isaam Saeed; Bc Chang; Sen-Lin Tang; Saman K. Halgamuge (BMC Bioinform., 2015)

ENVirT: inference of ecological characteristics of viruses from metagenomic data. - Duleepa Jayasundara; Damayanthi Herath; Damith A. Senanayake; Isaam Saeed; Cheng-Yu Yang; Yuan Sun 003; Bill C. Chang; Sen-Lin Tang; Saman K. Halgamuge (BMC Bioinform., 2019)