On the optimal design of metabolic RNA labeling experiments. - Alexey Uvarovskii; Isabel S. Naarmann-de Vries; Christoph Dieterich (PLoS Comput. Biol., 2019)

A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover. - Etienne Boileau; Janine Altmüller; Isabel S. Naarmann-de Vries; Christoph Dieterich (Briefings Bioinform., 2021)

Characterizing alternative splicing effects on protein interaction networks with LINDA. - Enio Gjerga; Isabel S. Naarmann-de Vries; Christoph Dieterich (Bioinform., 2023)