Computational Protein Design as a Cost Function Network Optimization Problem. - David Allouche; Seydou Traoré; Isabelle André; Simon de Givry; George Katsirelos; Sophie Barbe; Thomas Schiex (CP, 2012)

A new framework for computational protein design through cost function network optimization. - Seydou Traoré; David Allouche; Isabelle André; Simon de Givry; George Katsirelos; Thomas Schiex; Sophie Barbe (Bioinform., 2013)

Computational protein design as an optimization problem. - David Allouche; Isabelle André; Sophie Barbe; Jessica Davies 001; Simon de Givry; George Katsirelos; Barry O'Sullivan; Steven D. Prestwich; Thomas Schiex; Seydou Traoré (Artif. Intell., 2014)

Fast search algorithms for computational protein design. - Seydou Traoré; Kyle E. Roberts; David Allouche; Bruce Randall Donald; Isabelle André; Thomas Schiex; Sophie Barbe (J. Comput. Chem., 2016)

Structural Reconstruction of E. coli Ubi Metabolon Using an AlphaFold2-Based Computational Framework. - Romain Launay; Sophie-Carole Chobert; Sophie S. Abby; Fabien Pierrel; Isabelle André; Jérémy Esque (J. Chem. Inf. Model., 2024)