In-depth performance evaluation of PFP and ESG sequence-based function prediction methods in CAFA 2011 experiment. - Meghana Chitale; Ishita K. Khan; Daisuke Kihara (BMC Bioinform., 2013)

PFP/ESG: automated protein function prediction servers enhanced with Gene Ontology visualization tool. - Ishita K. Khan; Qing Wei; Meghana Chitale; Daisuke Kihara (Bioinform., 2015)

Genome-scale prediction of moonlighting proteins using diverse protein association information. - Ishita K. Khan; Daisuke Kihara (Bioinform., 2016)

What is skipped: Finding desirable items in e-commerce search by discovering the worst title tokens. - Ishita K. Khan; Prathyusha Senthil Kumar; Daniel Miranda; David Goldberg 001 (IEEE BigData, 2017)

DextMP: deep dive into text for predicting moonlighting proteins. - Ishita K. Khan; Mansurul Bhuiyan; Daisuke Kihara (Bioinform., 2017)

NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology. - Qing Wei; Ishita K. Khan; Ziyun Ding; Satwica Yerneni; Daisuke Kihara (BMC Bioinform., 2017)

IAS: Interaction Specific GO Term Associations for Predicting Protein-Protein Interaction Networks. - Satwica Yerneni; Ishita K. Khan; Qing Wei; Daisuke Kihara (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Contextual Price Features for e-Commerce Search Ranking. - Ishita K. Khan; Aritra Mandal; Prathyusha Senthil Kumar (IEEE BigData, 2019)

Query Rewriting using Automatic Synonym Extraction for E-commerce Search. - Aritra Mandal; Ishita K. Khan; Prathyusha Senthil Kumar (eCOM@SIGIR, 2019)

Prediction of protein group function by iterative classification on functional relevance network. - Ishita K. Khan; Aashish Jain; Reda Rawi; Halima Bensmail; Daisuke Kihara (Bioinform., 2019)

AI Guided Accelerator For Search Experience. - Jayanth Yetukuri; Mehran Elyasi; Samarth Agrawal; Aritra Mandal; Rui Kong; Harish Vempati; Ishita K. Khan (CoRR, 2025)