Determining the 3-D Motion of a Rigid Surface Patch Without Correspondence under Perspective Projection. - Yiannis Aloimonos; Isidore Rigoutsos (AAAI, 1986)

An algorithm for point clustering and grid generation. - Marsha J. Berger; Isidore Rigoutsos (IEEE Trans. Syst. Man Cybern., 1991)

Visuo-Tactual Coarseness Estimation Tasks: Experiments and Modeling. - Isidore Rigoutsos (Advances in Machine Vision, 1992)

Massively Parallel Model Matching: Geometric Hashing on the Connection Machine. - Isidore Rigoutsos; Robert A. Hummel (Computer, 1992)

Massively Parallel Bayesian Object Recognition. - Isidore Rigoutsos (1992)

FLASH: a fast look-up algorithm for string homology. - Andrea Califano; Isidore Rigoutsos (CVPR, 1993)

Distributed Bayesian object recognition. - Isidore Rigoutsos; Robert A. Hummel (CVPR, 1993)

A Bayesian Approach to Model Matching with Geometric Hashing. - Isidore Rigoutsos; Robert A. Hummel (Comput. Vis. Image Underst., 1995)

The Impact of Hashing Function Choice on the Load Balancing in Very Large Dartasets. - Isidore Rigoutsos; Alex Delis (SEKE, 1996)

Automated Discovery of Active Motifs in Three Dimensional Molecules. - Xiong Wang; Jason Tsong-Li Wang; Dennis E. Shasha; Bruce A. Shapiro; Sitaram Dikshitulu; Isidore Rigoutsos; Kaizhong Zhang (KDD, 1997)

Well-Behaved, Tunable 3D-Affine Invariants. - Isidore Rigoutsos (CVPR, 1998)

Two-Dimensional Affine Invariants that Distribute Uniformly and can be Tuned to any Convex Feature Domain. - Isidore Rigoutsos (ICCV, 1998)

Motif discovery without alignment or enumeration (extended abstract). - Isidore Rigoutsos; Aris Floratos (RECOMB, 1998)

Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm [published erratum appears in Bioinformatics 1998;14(2): 229]. - Isidore Rigoutsos; Aris Floratos (Bioinform., 1998)

Managing Statistical Behavior of Large Data Sets in Shared-Nothing Architectures. - Isidore Rigoutsos; Alex Delis (IEEE Trans. Parallel Distributed Syst., 1998)

Representation and Matching of Small Flexible Molecules in Large Databases of 3D Molecular Information. - Isidore Rigoutsos; Daniel E. Platt; Andrea Califano; B. David Silverman (Pattern Discovery in Biomolecular Data, 1999)

Building Dictionaries of 1D and 3D Motifs by Mining the Unaligned 1D Sequences of 17 Archaeal and Bacterial Genomes. - Isidore Rigoutsos; Yuan Gao; Aris Floratos; Laxmi Parida (ISMB, 1999)

Sequence homology detection through large scale pattern discovery. - Aris Floratos; Isidore Rigoutsos; Laxmi Parida; Gustavo Stolovitzky; Yuan Gao (RECOMB, 1999)

An Approximation Algorithm for Alignment of Multiple Sequences using Motif Discovery. - Laxmi Parida; Aris Floratos; Isidore Rigoutsos (J. Comb. Optim., 1999)

Knowledge discovery in biological domains (tutorial AM-3). - Aris Floratos; Igor Jurisica; Isidore Rigoutsos (KDD Tutorial Notes, 2000)

Pattern discovery on character sets and real-valued data: linear bound on irredundant motifs and an efficient polynomial time algorithm. - Laxmi Parida; Isidore Rigoutsos; Aris Floratos; Daniel E. Platt; Yuan Gao (SODA, 2000)

An Output-Sensitive Flexible Pattern Discovery Algorithm. - Laxmi Parida; Isidore Rigoutsos; Daniel E. Platt (CPM, 2001)

DELPHI: A pattern-based method for detecting sequence similarity. - Aris Floratos; Isidore Rigoutsos; Laxmi Parida; Yuan Gao (IBM J. Res. Dev., 2001)

QSAR in grossly underdetermined systems: Opportunities and issues. - Daniel E. Platt; Laxmi Parida; Yuan Gao; Aris Floratos; Isidore Rigoutsos (IBM J. Res. Dev., 2001)

Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining. - Xiong Wang; Jason Tsong-Li Wang; Dennis E. Shasha; Bruce A. Shapiro; Isidore Rigoutsos; Kaizhong Zhang (IEEE Trans. Knowl. Data Eng., 2002)

Evaluation of annotation strategies using an entire genome sequence. - Ioannis Iliopoulos; Sophia Tsoka; Miguel A. Andrade; Anton J. Enright; Mark Carroll; Patrick Poullet; Vasilis J. Promponas; Theodore Liakopoulos; Giorgos Palaios; Claude Pasquier; Stavros J. Hamodrakas; Javier Tamames; et al. (Bioinform., 2003)

The web server of IBM's Bioinformatics and Pattern Discovery group. - Tien Huynh; Isidore Rigoutsos; Laxmi Parida; Daniel E. Platt; Tetsuo Shibuya (Nucleic Acids Res., 2003)

Chung-Kwei: a Pattern-discovery-based System for the Automatic Identification of Unsolicited E-mail Messages (SPAM). - Isidore Rigoutsos; Tien Huynh (CEAS, 2004)

Of parts and relationships: an unending quest. - Isidore Rigoutsos (CIKM, 2004)

The web server of IBM's Bioinformatics and Pattern Discovery group: 2004 update. - Tien Huynh; Isidore Rigoutsos (Nucleic Acids Res., 2004)

Report on BIOKDD04: workshop on data mining in Bioinformatics. - Mohammed Javeed Zaki; Shinichi Morishita; Isidore Rigoutsos (SIGKDD Explor., 2004)

A generic motif discovery algorithm for sequential data. - Kyle L. Jensen; Mark P. Styczynski; Isidore Rigoutsos; Gregory Stephanopoulos (Bioinform., 2006)

Data mining and clinical data repositories: Insights from a 667, 000 patient data set. - Irene M. Mullins; Mir S. Siadaty; Jason A. Lyman; Ken Scully; Carleton T. Garrett; W. Greg Miller; Rudy Muller; Barry Robson; Chid Apté; Sholom M. Weiss; Isidore Rigoutsos; Daniel E. Platt; et al. (Comput. Biol. Medicine, 2006)

Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes. - Aristotelis Tsirigos; Isidore Rigoutsos (PLoS Comput. Biol., 2009)

Anchoring millions of distinct reads on the human genome within seconds. - Tien Huynh; Michail Vlachos; Isidore Rigoutsos (EDBT, 2010)

Interactive exploration of RNA22 microRNA target predictions. - Phillipe Loher; Isidore Rigoutsos (Bioinform., 2012)

MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments. - Venetia Pliatsika; Phillipe Loher; Aristeidis G. Telonis; Isidore Rigoutsos (Bioinform., 2016)

Consequential considerations when mapping tRNA fragments. - Aristeidis G. Telonis; Phillipe Loher; Yohei Kirino; Isidore Rigoutsos (BMC Bioinform., 2016)

Threshold-seq: a tool for determining the threshold in short RNA-seq datasets. - Rogan Magee; Phillipe Loher; Eric Londin; Isidore Rigoutsos (Bioinform., 2017)

MINTbase v2.0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projects. - Venetia Pliatsika; Phillipe Loher; Rogan Magee; Aristeidis G. Telonis; Eric Londin; Megumi Shigematsu; Yohei Kirino; Isidore Rigoutsos (Nucleic Acids Res., 2018)

Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. - Thomas Desvignes; Phillipe Loher; Karen Eilbeck; Jeffery Ma; Gianvito Urgese; Bastian Fromm; Jason Sydes; Ernesto Aparicio-Puerta; Víctor Barrera; Roderic Espín; Florian Thibord; Xavier Bofill-De Ros; et al. (Bioinform., 2020)

IsoMiRmap: fast, deterministic and exhaustive mining of isomiRs from short RNA-seq datasets. - Phillipe Loher; Nestoras Karathanasis; Eric Londin; Paul F. Bray; Venetia Pliatsika; Aristeidis G. Telonis; Isidore Rigoutsos (Bioinform., 2021)

Reproducibility efforts as a teaching tool: A pilot study. - Nestoras Karathanasis; Daniel Hwang; Vibol Heng; Rimal Abhimannyu; Phillip Slogoff-Sevilla; Gina Buchel; Victoria Frisbie; Peiyao Li; Dafni Kryoneriti; Isidore Rigoutsos (PLoS Comput. Biol., 2022)