Protein Chemical Cross-linking/Mass Spectrometry: From raw data to fully immersive visualizations. - Islam Akef Ebeid; Carolina Cruz-Neira; Mihir Jaiswal; Boris Zybaylov (Computational Imaging, 2016)

Real-time gaze transition entropy. - Islam Akef Ebeid; Jacek Gwizdka (ETRA, 2018)

Analyzing gaze transition behavior using bayesian mixed effects Markov models. - Islam Akef Ebeid; Nilavra Bhattacharya; Jacek Gwizdka; Abhra Sarkar (ETRA, 2019)

Building a PubMed knowledge graph. - Jian Xu 003; Sunkyu Kim; Min Song 001; Minbyul Jeong; Donghyeon Kim; Jaewoo Kang; Justin F. Rousseau; Xin Li 091; Weijia Xu; Vetle I. Torvik; Yi Bu 001; Chongyan Chen; et al. (CoRR, 2020)

Coronavirus Knowledge Graph: A Case Study. - Chongyan Chen; Islam Akef Ebeid; Yi Bu 001; Ying Ding 001 (CoRR, 2020)

Biomedical Knowledge Graph Refinement and Completion Using Graph Representation Learning and Top-K Similarity Measure. - Islam Akef Ebeid; Majdi Hassan; Tingyi Wanyan; Jack Roper; Abhik Seal; Ying Ding 001 (iConference (1), 2021)

Graph-based hierarchical record clustering for unsupervised entity resolution. - Islam Akef Ebeid; John R. Talburt; Md Abdus Salam Siddique (CoRR, 2021)

MedGraph: An experimental semantic information retrieval method using knowledge graph embedding for the biomedical citations indexed in PubMed. - Islam Akef Ebeid; Elizabeth Pierce (CoRR, 2021)

Analyzing knowledge entities about COVID-19 using entitymetrics. - Qi Yu 005; Qi Wang 021; Yafei Zhang; Chongyan Chen; Hyeyoung Ryu; Namu Park; Jae-Eun Baek; Keyuan Li; Yifei Wu; Daifeng Li; Jian Xu 003; Meijun Liu; et al. (Scientometrics, 2021)

MedGraph: A semantic biomedical information retrieval framework using knowledge graph embedding for PubMed. - Islam Akef Ebeid (Frontiers Big Data, 2022)

Reply to issues about entitymetrics and paper-entity citation network. - Qi Yu 005; Qi Wang 021; Yafei Zhang; Chongyan Chen; Hyeyoung Ryu; Namu Park; Jae-Eun Baek; Keyuan Li; Yifei Wu; Daifeng Li; Jian Xu 003; Meijun Liu; et al. (Scientometrics, 2022)

Adapting a Segmentation Foundation Model for Medical Image Classification. - Pengfei Gu; Haoteng Tang; Islam Akef Ebeid; Jose Angel Nuñez; Fabian Vazquez; Diego Adame; Marcus Zhan; Huimin Li; Bin Fu; Danny Z. Chen (CBMS, 2025)