Correcting BLAST e-Values for Low-Complexity Segments. - Itai Sharon; Aaron Birkland; Kuan Y. Chang; Ran El-Yaniv; Golan Yona (J. Comput. Biol., 2005)

A Statistical Framework for the Functional Analysis of Metagenomes. - Itai Sharon; Amrita Pati; Victor M. Markowitz; Ron Y. Pinter (RECOMB, 2009)

Computational methods for metagenomic analysis. - Itai Sharon (2010)

Pathway-Based Functional Analysis of Metagenomes. - Itai Sharon; Sivan Bercovici; Ron Y. Pinter; Tomer Shlomi (J. Comput. Biol., 2011)

Lossy Compression of Quality Values via Rate Distortion Theory - Himanshu Asnani; Dinesh Bharadia; Mainak Chowdhury; Idoia Ochoa; Itai Sharon; Tsachy Weissman (CoRR, 2012)