Recycler: an algorithm for detecting plasmids from de novo assembly graphs. - Roye Rozov; Aya Brown Kav; David Bogumil; Naama Shterzer; Eran Halperin; Itzhak Mizrahi; Ron Shamir (Bioinform., 2017)

Modeling the temporal dynamics of the gut microbial community in adults and infants. - Liat Shenhav; Ori Furman; Leah Briscoe; Mike Thompson; Justin D. Silverman; Itzhak Mizrahi; Eran Halperin (PLoS Comput. Biol., 2019)