Genetack: frameshift Identification in protein-Coding Sequences by the Viterbi Algorithm. - Ivan Antonov; Mark Borodovsky (J. Bioinform. Comput. Biol., 2010)

Detection of frameshifts and improving genome annotation. - Ivan Antonov (2012)

MetaGeneTack: ab initio detection of frameshifts in metagenomic sequences. - Shiyuyun Tang; Ivan Antonov; Mark Borodovsky (Bioinform., 2013)

GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences. - Ivan Antonov; Pavel V. Baranov; Mark Borodovsky (Nucleic Acids Res., 2013)

ASSA: Fast identification of statistically significant interactions between long RNAs. - Ivan Antonov; Andrey Marakhonov; Maria Zamkova; Yulia A. Medvedeva (J. Bioinform. Comput. Biol., 2018)

Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools. - Ivan V. Antonov; Evgeny Mazurov; Mark Borodovsky; Yulia A. Medvedeva (Briefings Bioinform., 2019)