In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon. - Ivan Erill; Marcos Escribano; Susana Campoy; Jordi Barbé (Bioinform., 2003)

Manufacturing and full characterization of silicon carbide-based multi-sensor micro-probes for biomedical applications. - Gemma Gabriel; Ivan Erill; Jaume Caro; Rodrigo Gómez; Dolors Riera; Rosa Villa; Philippe Godignon (Microelectron. J., 2007)

A reexamination of information theory-based methods for DNA-binding site identification. - Ivan Erill; Michael C. O'Neill (BMC Bioinform., 2009)

BioWord: a sequence manipulation suite for Microsoft Word. - Laura J. Anzaldi; Daniel Muñoz-Fernández; Ivan Erill (BMC Bioinform., 2012)

Characterization of the SOS meta-regulon in the human gut microbiome. - Joseph P. Cornish; Neus Sanchez-Alberola; Patrick K. O'Neill; Ronald O'Keefe; Jameel Gheba; Ivan Erill (Bioinform., 2014)

Informational Requirements for Transcriptional Regulation. - Patrick K. O'Neill; Robert Forder; Ivan Erill (J. Comput. Biol., 2014)

CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria. - Sefa Kiliç; Elliot R. White; Dinara M. Sagitova; Joseph P. Cornish; Ivan Erill (Nucleic Acids Res., 2014)

A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data. - Elizabeth T. Hobbs; Talmo Pereira; Patrick K. O'Neill; Ivan Erill (Algorithms Mol. Biol., 2016)

From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF. - Sefa Kiliç; Dinara M. Sagitova; Shoshannah Wolfish; Benoit Bely; Mélanie Courtot; Stacy Ciufo; Tatiana A. Tatusova; Claire O'Donovan; Marcus C. Chibucos; Maria Jesus Martin; Ivan Erill (Database J. Biol. Databases Curation, 2016)

Assessment of transfer methods for comparative genomics of regulatory networks in bacteria. - Sefa Kiliç; Ivan Erill (BMC Bioinform., 2016)

Parametric bootstrapping for biological sequence motifs. - Patrick K. O'Neill; Ivan Erill (BMC Bioinform., 2016)

ECO, the Evidence & Conclusion Ontology: community standard for evidence information. - Michelle G. Giglio; Rebecca Tauber; Suvarna Nadendla; James B. Munro; Dustin Olley; Shoshannah Ball; Elvira Mitraka; Lynn M. Schriml; Pascale Gaudet; Elizabeth T. Hobbs; Ivan Erill; Deborah A. Siegele; et al. (Nucleic Acids Res., 2019)

Corpora as Evolving Entities: Embedding Corpora in Biomedical Ontologies. - Elizabeth T. Hobbs; Stephen M. Goralski; Ashley Mitchell; Andrew Simpson 007; Dorjan Leka; Emmanuel Kotey; Matt Sekira; James B. Munro; Suvarna Nadendla; Rebecca Jackson; Aitor Gonzalez-Agirre; Martin Krallinger; et al. (ICBO/ODLS, 2020)

Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases. - Qingyu Chen 001; Ramona Britto; Ivan Erill; Constance J. Jeffery; Arthur Liberzon; Michele Magrane; Jun-ichi Onami; Marc Robinson-Rechavi; Jana Sponarova; Justin Zobel; Karin Verspoor (Genom. Proteom. Bioinform., 2020)

ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts. - Elizabeth T. Hobbs; Stephen M. Goralski; Ashley Mitchell; Andrew Simpson 007; Dorjan Leka; Emmanuel Kotey; Matt Sekira; James B. Munro; Suvarna Nadendla; Rebecca Jackson; Aitor Gonzalez-Agirre; Martin Krallinger; et al. (Frontiers Res. Metrics Anal., 2021)

Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO). - Jolene Ramsey; Brenley K. McIntosh; Daniel P. Renfro; Suzanne A. Aleksander; Sandra A. LaBonte; Curtis Ross; Adrienne E. Zweifel; Nathan Liles; Shabnam Farrar; Jason J. Gill; Ivan Erill; Sarah Ades; et al. (PLoS Comput. Biol., 2021)

ECO: the Evidence and Conclusion Ontology, an update for 2022. - Suvarna Nadendla; Rebecca C. Jackson; James B. Munro; Federica Quaglia; Bálint Mészáros; Dustin Olley; Elizabeth T. Hobbs; Stephen M. Goralski; Marcus C. Chibucos; Christopher J. Mungall; Silvio C. E. Tosatto; Ivan Erill; et al. (Nucleic Acids Res., 2022)