OpusIB - Grid Enabled Opteron Cluster with InfiniBand Interconnect. - Olaf Schneider; Frank Schmitz; Ivan Kondov; Thomas Brandel (PARA, 2006)

Protein structure prediction using particle swarm optimization and a distributed parallel approach. - Ivan Kondov; Rüdiger Berlich (BADS@ICAC, 2011)

A Pipeline Pilot based SOAP implementation of FlexScreen for High-Throughput Virtual Screening. - Horacio Emilio Pérez Sánchez; Ivan Kondov; José M. García 001; Konstantin V. Klenin; Wolfgang Wenzel (IWSG-Life, 2011)

Benchmarking the POEM@HOME Network for Protein Structure Prediction. - Timo Strunk; Priya Anand; Martin Brieg; Moritz Wolf; Konstantin V. Klenin; Irene Meliciani; Frank Tristram; Ivan Kondov; Wolfgang Wenzel (IWSG-Life, 2011)

Performance assessment of different constraining potentials in computational structure prediction for disulfide-bridged proteins. - Ivan Kondov; Abhinav Verma; Wolfgang Wenzel (Comput. Biol. Chem., 2011)

Structure Simulation with Calculated NMR Parameters - Integrating COSMOS into the CCPN Framework. - Olaf Schneider; Rasmus H. Fogh; Ulrich Sternberg; Konstantin V. Klenin; Ivan Kondov (HealthGrid, 2012)

SIMONA 1.0: An efficient and versatile framework for stochastic simulations of molecular and nanoscale systems. - Timo Strunk; Moritz Wolf; Martin Brieg; Konstantin V. Klenin; A. Biewer; Frank Tristram; Matthias Ernst; P. J. Kleine; N. Heilmann; Ivan Kondov; Wolfgang Wenzel (J. Comput. Chem., 2012)

A Service-oriented Framework for Integration of Domain-specific Data Models in Scientific Workflows. - Andreas Bender; Angela Poschlad; Stefan Bozic; Ivan Kondov (ICCS, 2013)

Protein structure prediction using distributed parallel particle swarm optimization. - Ivan Kondov (Nat. Comput., 2013)

Integration of eSBMTools into the MoSGrid Portal Using the gUSE Technology. - Stefan Bozic; Jens Krüger 002; Claude Sinner; Benjamin Lutz; Alexander Schug; Ivan Kondov (IWSG, 2014)

An EMF-based Toolkit for Creation of Domain-specific Data Services. - Andreas Bender; Stefan Bozic; Ivan Kondov (MODELSWARD, 2014)

Native structure-based modeling and simulation of biomolecular systems per mouse click. - Benjamin Lutz; Claude Sinner; Stefan Bozic; Ivan Kondov; Alexander Schug (BMC Bioinform., 2014)

Preparing HPC Applications for Exascale: Challenges and Recommendations. - Erika Ábrahám; Costas Bekas; Ivona Brandic; Samir Genaim; Einar Broch Johnsen; Ivan Kondov; Sabri Pllana; Achim Streit (NBiS, 2015)

Simulationen - unendliche Breiten. - Jochen Barwind; Rüdiger Berlich; Jörg Hilpert; Ivan Kondov; Peter Lürßen; Almut Zwölfer (LOG IN, 2015)

Multiscale Simulation of Organic Electronics Via Smart Scheduling of Quantum Mechanics Computations. - Pascal Friederich; Timo Strunk; Wolfgang Wenzel; Ivan Kondov (ICCS, 2016)

Massively Parallel Stencil Code Solver with Autonomous Adaptive Block Distribution. - Marco Berghoff; Ivan Kondov; Johannes Hötzer (IEEE Trans. Parallel Distributed Syst., 2018)

Workflow Generation with wfGenes. - Mehdi Roozmeh; Ivan Kondov (WORKS@SC, 2020)

Automating and Scaling Task-Level Parallelism of Tightly Coupled Models via Code Generation. - Mehdi Roozmeh; Ivan Kondov (ICCS (4), 2022)

Domain Specific Language for Materials Modeling. - Ivan Kondov; Rodrigo Cortés Mejía; Marvin Müller; Nikolai Pfisterer; Sruthy Sreenivasan (ICCS (Workshops 3), 2025)