Identification of caveolin-1 domain signatures via machine learning and graphlet analysis of single-molecule super-resolution data. - Ismail M. Khater; Fanrui Meng; Ivan Robert Nabi; Ghassan Hamarneh (Bioinform., 2019)

A Review of Super-Resolution Single-Molecule Localization Microscopy Cluster Analysis and Quantification Methods. - Ismail M. Khater; Ivan Robert Nabi; Ghassan Hamarneh (Patterns, 2020)

ERGO: Efficient Recurrent Graph Optimized Emitter Density Estimation in Single Molecule Localization Microscopy. - Ben Cardoen; Hanene Ben Yedder; Anmol Sharma; Keng C. Chou; Ivan Robert Nabi; Ghassan Hamarneh (IEEE Trans. Medical Imaging, 2020)

DEEMD: Drug Efficacy Estimation against SARS-CoV-2 based on cell Morphology with Deep multiple instance learning. - M. Sadegh Saberian; Kathleen P. Moriarty; Andrea D. Olmstead; Ivan Robert Nabi; François Jean; Maxwell W. Libbrecht; Ghassan Hamarneh (CoRR, 2021)

DEEMD: Drug Efficacy Estimation Against SARS-CoV-2 Based on Cell Morphology With Deep Multiple Instance Learning. - M. Sadegh Saberian; Kathleen P. Moriarty; Andrea D. Olmstead; Christian Hallgrimson; François Jean; Ivan Robert Nabi; Maxwell W. Libbrecht; Ghassan Hamarneh (IEEE Trans. Medical Imaging, 2022)

AI-based analysis of super-resolution microscopy: Biological discovery in the absence of ground truth. - Ivan Robert Nabi; Ben Cardoen; Ismail M. Khater; Guang Gao; Timothy H. Wong; Ghassan Hamarneh (CoRR, 2023)

LogParadox. - Ben Cardoen; Hanene Ben Yedder; Sieun Lee; Ivan Robert Nabi; Ghassan Hamarneh (Zenodo, 2023)

Closing the multichannel gap through computational reconstruction of interaction in super-resolution microscopy. - Ben Cardoen; Hanene Ben Yedder; Ivan Robert Nabi; Ghassan Hamarneh (Patterns, 2025)

SuperResNET: Model-Free Single-Molecule Network Analysis Software Achieves Molecular Resolution of Nup96. - Yahongyang Lydia Li; Ismail M. Khater; Christian Hallgrimson; Ben Cardoen; Timothy H. Wong; Ghassan Hamarneh; Ivan Robert Nabi (Adv. Intell. Syst., 2025)