Ab initio calculations of intramolecular parameters for a class of arylamide polymers. - Satyavani Vemparala; Ivaylo Ivanov; Vojislava Pophristic; Katrin Spiegel; Michael L. Klein (J. Comput. Chem., 2006)

Alkylpurine Glycosylase D Employs DNA Sculpting as a Strategy to Extrude and Excise Damaged Bases. - Bradley Kossmann; Ivaylo Ivanov (PLoS Comput. Biol., 2014)

Intuitionistic Fuzzy Dependency Framework. - Boyan Kolev; Ivaylo Ivanov (Imprecision and Uncertainty in Information Representation and Processing, 2016)

Simulation-Based Methods for Model Building and Refinement in Cryoelectron Microscopy. - Thomas Dodd; Chunli Yan; Ivaylo Ivanov (J. Chem. Inf. Model., 2020)

Comparative Analysis of Fine-tuned Deep Learning Language Models for ICD-10 Classification Task for Bulgarian Language. - Boris Velichkov; Sylvia Vassileva; Simeon Gerginov; Boris Kraychev; Ivaylo Ivanov; Philip Ivanov; Ivan Koychev; Svetla Boytcheva (RANLP, 2021)