Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design. - Ivelin Georgiev; Ryan H. Lilien; Bruce Randall Donald (ISMB (Supplement of Bioinformatics), 2006)

A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles. - Ivelin Georgiev; Ryan H. Lilien; Bruce Randall Donald (RECOMB, 2006)

Dead-End Elimination with Backbone Flexibility. - Ivelin Georgiev; Bruce Randall Donald (ISMB/ECCB (Supplement of Bioinformatics), 2007)

Algorithm for backrub motions in protein design. - Ivelin Georgiev; Daniel A. Keedy; Jane S. Richardson; David C. Richardson; Bruce Randall Donald (ISMB, 2008)

The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles. - Ivelin Georgiev; Ryan H. Lilien; Bruce Randall Donald (J. Comput. Chem., 2008)

Novel Algorithms for Computational Protein Design, with Applications to Enzyme Redesign and Small-Molecule Inhibitor Design. - Ivelin S. Georgiev (2009)

Computational prediction of N-linked glycosylation incorporating structural properties and patterns. - Gwo-Yu Chuang; Jeffrey C. Boyington; M. Gordon Joyce; Jiang Zhu; Gary J. Nabel; Peter D. Kwong; Ivelin Georgiev (Bioinform., 2012)

The Role of Local Backrub Motions in Evolved and Designed Mutations. - Daniel A. Keedy; Ivelin Georgiev; Edward B. Triplett; Bruce Randall Donald; David C. Richardson; Jane S. Richardson (PLoS Comput. Biol., 2012)

NEP: web server for epitope prediction based on antibody neutralization of viral strains with diverse sequences. - Gwo-Yu Chuang; David Liou; Peter D. Kwong; Ivelin Georgiev (Nucleic Acids Res., 2014)

Structure and immune recognition of trimeric pre-fusion HIV-1 Env. - Marie Pancera; Tongqing Zhou; Aliaksandr Druz; Ivelin S. Georgiev; Cinque S. Soto; Jason Gorman; Jinghe Huang; Priyamvada Acharya; Gwo-Yu Chuang; Gilad Ofek; Guillaume B. E. Stewart-Jones; Jonathan Stuckey; et al. (Nat., 2014)

: Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial. - Paul Thatcher Edlefsen; Morgane Rolland; Tomer Hertz; Sodsai Tovanabutra; Andrew J. Gartland; Allan C. deCamp; Craig A. Magaret; Hasan Ahmed; Raphael Gottardo; Michal Juraska; Connor McCoy; Brendan B. Larsen; et al. (PLoS Comput. Biol., 2015)

BWM*: A Novel, Provable, Ensemble-based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design. - Jonathan D. Jou; Swati Jain; Ivelin Georgiev; Bruce Randall Donald (J. Comput. Biol., 2016)

A critical analysis of computational protein design with sparse residue interaction graphs. - Swati Jain; Jonathan D. Jou; Ivelin S. Georgiev; Bruce Randall Donald (PLoS Comput. Biol., 2017)

NFPws: a web server for delineating broadly neutralizing antibody specificities from serum HIV-1 neutralization data. - Nagarajan Raju; Ian Setliff; Ivelin S. Georgiev (Bioinform., 2019)

Prediction of VRC01 neutralization sensitivity by HIV-1 gp160 sequence features. - Craig A. Magaret; David C. Benkeser; Brian D. Williamson; Bhavesh Borate; Lindsay N. Carpp; Ivelin S. Georgiev; Ian Setliff; Adam S. Dingens; Noah Simon; Marco Carone; Christopher Simpkins; David C. Montefiori; et al. (PLoS Comput. Biol., 2019)

An expandable synthetic library of human paired antibody sequences. - Toma M. Marinov; Perry T. Wasdin; Gwen Jordaan; Alexis K. Janke; Alexandra A. Abu-Shmais; Ivelin S. Georgiev (PLoS Comput. Biol., 2025)