InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites - Nicola J. Mulder; Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Philipp Bucher; Richard R. Copley; Emmanuel Courcelle; et al. (Briefings Bioinform., 2002)

Recent improvements to the SMART domain-based sequence annotation resource. - Ivica Letunic; Leo Goodstadt; Nicholas J. Dickens; Tobias Doerks; Jörg Schultz; Richard Mott; Francesca D. Ciccarelli; Richard R. Copley; Chris P. Ponting; Peer Bork (Nucleic Acids Res., 2002)

The InterPro Database, 2003 brings increased coverage and new features. - Nicola J. Mulder; Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Daniel Barrell; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Philipp Bucher; Richard R. Copley; et al. (Nucleic Acids Res., 2003)

ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. - Pål Puntervoll; Rune Linding; Christine Gemünd; Sophie Chabanis-Davidson; Morten Mattingsdal; Scott Cameron; David M. A. Martin; Gabriele Ausiello; Barbara Brannetti; Anna Costantini; Fabrizio Ferrè; Vincenza Maselli; et al. (Nucleic Acids Res., 2003)

SMART 4.0: towards genomic data integration. - Ivica Letunic; Richard R. Copley; Steffen Schmidt; Francesca D. Ciccarelli; Tobias Doerks; Jörg Schultz; Chris P. Ponting; Peer Bork (Nucleic Acids Res., 2004)

InterPro, progress and status in 2005. - Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Paul Bradley; Peer Bork; Phillip Bucher; Lorenzo Cerutti; Richard R. Copley; Emmanuel Courcelle; et al. (Nucleic Acids Res., 2005)

SMART 5: domains in the context of genomes and networks. - Ivica Letunic; Richard R. Copley; Birgit Pils; Stefan Pinkert; Jörg Schultz; Peer Bork (Nucleic Acids Res., 2006)

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. - Ivica Letunic; Peer Bork (Bioinform., 2007)

New developments in the InterPro database. - Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Virginie Buillard; Lorenzo Cerutti; Richard R. Copley; Emmanuel Courcelle; Ujjwal Das; et al. (Nucleic Acids Res., 2007)

Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress. - Yannick Haudry; Chuang Kee Ong; Laurence Ettwiller; Hugo Bérubé; Ivica Letunic; Misha Kapushesky; Paul-Daniel Weeber; Xi Wang; Julien Gagneur; Charles Girardot; Detlev Arendt; Peer Bork; et al. (APBC, 2008)

4DXpress: a database for cross-species expression pattern comparisons. - Yannick Haudry; Hugo Bérubé; Ivica Letunic; Paul-Daniel Weeber; Julien Gagneur; Charles Girardot; Misha Kapushesky; Detlev Arendt; Peer Bork; Alvis Brazma; Eileen E. M. Furlong; Joachim Wittbrodt; et al. (Nucleic Acids Res., 2008)

InterPro: the integrative protein signature database. - Sarah Hunter; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Ujjwal Das; Louise C. Daugherty; Lauranne Duquenne; Robert D. Finn; Julian Gough; et al. (Nucleic Acids Res., 2009)

SMART 6: recent updates and new developments. - Ivica Letunic; Tobias Doerks; Peer Bork (Nucleic Acids Res., 2009)

metaTIGER: a metabolic evolution resource. - John W. Whitaker; Ivica Letunic; Glenn A. McConkey; David R. Westhead (Nucleic Acids Res., 2009)

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations. - Jean Muller; Damian Szklarczyk; Philippe Julien; Ivica Letunic; Alexander Roth 001; Michael Kuhn 004; Sean Powell; Christian von Mering; Tobias Doerks; Lars Juhl Jensen; Peer Bork (Nucleic Acids Res., 2010)

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. - Ivica Letunic; Peer Bork (Nucleic Acids Res., 2011)

iPath2.0: interactive pathway explorer. - Takuji Yamada; Ivica Letunic; Shujiro Okuda; Minoru Kanehisa; Peer Bork (Nucleic Acids Res., 2011)

InterPro in 2011: new developments in the family and domain prediction database. - Sarah Hunter; Philip Jones; Alex L. Mitchell; Rolf Apweiler; Teresa K. Attwood; Alex Bateman; Thomas Bernard; David Binns; Peer Bork; Sarah W. Burge; Edouard De Castro; Penny C. Coggill; et al. (Nucleic Acids Res., 2012)

SMART 7: recent updates to the protein domain annotation resource. - Ivica Letunic; Tobias Doerks; Peer Bork (Nucleic Acids Res., 2012)

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges. - Sean Powell; Damian Szklarczyk; Kalliopi Trachana; Alexander Roth 001; Michael Kuhn 004; Jean Muller; Roland Arnold; Thomas Rattei; Ivica Letunic; Tobias Doerks; Lars Juhl Jensen; Christian von Mering; et al. (Nucleic Acids Res., 2012)

PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins. - Pablo Minguez; Ivica Letunic; Luca Parca; Peer Bork (Nucleic Acids Res., 2013)

SMART: recent updates, new developments and status in 2015. - Ivica Letunic; Tobias Doerks; Peer Bork (Nucleic Acids Res., 2015)

PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins. - Pablo Minguez; Ivica Letunic; Luca Parca; Luz Garcia-Alonso; Joaquín Dopazo; Jaime Huerta-Cepas; Peer Bork (Nucleic Acids Res., 2015)

The InterPro protein families database: the classification resource after 15 years. - Alex L. Mitchell; Hsin-Yu Chang; Louise C. Daugherty; Matthew Fraser; Sarah Hunter; Rodrigo Lopez; Craig McAnulla; Conor McMenamin; Gift Nuka; Sebastien Pesseat; Amaia Sangrador-Vegas; Maxim Scheremetjew; et al. (Nucleic Acids Res., 2015)

The SIDER database of drugs and side effects. - Michael Kuhn 004; Ivica Letunic; Lars Juhl Jensen; Peer Bork (Nucleic Acids Res., 2016)

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees. - Ivica Letunic; Peer Bork (Nucleic Acids Res., 2016)

InterPro in 2017 - beyond protein family and domain annotations. - Robert D. Finn; Teresa K. Attwood; Patricia C. Babbitt; Alex Bateman; Peer Bork; Alan J. Bridge; Hsin-Yu Chang; Zsuzsanna Dosztányi; Sara El-Gebali; Matthew Fraser; Julian Gough; David Haft; et al. (Nucleic Acids Res., 2017)

proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes. - Daniel R. Mende; Ivica Letunic; Jaime Huerta-Cepas; Simone S. Li; Kristoffer Forslund; Shinichi Sunagawa; Peer Bork (Nucleic Acids Res., 2017)

iPath3.0: interactive pathways explorer v3. - Youssef Darzi; Ivica Letunic; Peer Bork; Takuji Yamada (Nucleic Acids Res., 2018)

20 years of the SMART protein domain annotation resource. - Ivica Letunic; Peer Bork (Nucleic Acids Res., 2018)

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. - Jaime Huerta-Cepas; Damian Szklarczyk; Davide Heller; Ana Hernández-Plaza; Sofia K. Forslund; Helen Cook; Daniel R. Mende; Ivica Letunic; Thomas Rattei; Lars Juhl Jensen; Christian von Mering; Peer Bork (Nucleic Acids Res., 2019)

Interactive Tree Of Life (iTOL) v4: recent updates and new developments. - Ivica Letunic; Peer Bork (Nucleic Acids Res., 2019)

InterPro in 2019: improving coverage, classification and access to protein sequence annotations. - Alex L. Mitchell; Teresa K. Attwood; Patricia C. Babbitt; Matthias Blum; Peer Bork; Alan J. Bridge; Shoshana D. Brown; Hsin-Yu Chang; Sara El-Gebali; Matthew Fraser; Julian Gough; David Haft; et al. (Nucleic Acids Res., 2019)

proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes. - Daniel R. Mende; Ivica Letunic; Oleksandr M. Maistrenko; Thomas S. B. Schmidt; Alessio Milanese; Lucas Paoli; Ana Hernández-Plaza; Askarbek N. Orakov; Sofia K. Forslund; Shinichi Sunagawa; Georg Zeller; Jaime Huerta-Cepas; et al. (Nucleic Acids Res., 2020)

The InterPro protein families and domains database: 20 years on. - Matthias Blum; Hsin-Yu Chang; Sara Chuguransky; Tiago Grego; Swaathi Kandasamy; Alex L. Mitchell; Gift Nuka; Typhaine Paysan-Lafosse; Matloob Qureshi; Shriya Raj; Lorna J. Richardson; Gustavo A. Salazar; et al. (Nucleic Acids Res., 2021)

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation. - Ivica Letunic; Peer Bork (Nucleic Acids Res., 2021)

SMART: recent updates, new developments and status in 2020. - Ivica Letunic; Supriya Khedkar; Peer Bork (Nucleic Acids Res., 2021)

proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes. - Anthony Fullam; Ivica Letunic; Thomas S. B. Schmidt; Quinten R. Ducarmon; Nicolai Karcher; Supriya Khedkar; Michael Kuhn 004; Martin Larralde; Oleksandr M. Maistrenko; Lukas Malfertheiner; Alessio Milanese; João F. Matias Rodrigues; et al. (Nucleic Acids Res., 2023)

eggNOG 6.0: enabling comparative genomics across 12 535 organisms. - Ana Hernández-Plaza; Damian Szklarczyk; Jorge Botas; Carlos P. Cantalapiedra; Joaquín Giner-Lamia; Daniel R. Mende; Rebecca Kirsch; Thomas Rattei; Ivica Letunic; Lars Juhl Jensen; Peer Bork; Christian von Mering; et al. (Nucleic Acids Res., 2023)

InterPro in 2022. - Typhaine Paysan-Lafosse; Matthias Blum; Sara Chuguransky; Tiago Grego; Beatriz Lázaro Pinto; Gustavo A. Salazar; Maxwell L. Bileschi; Peer Bork; Alan J. Bridge; Lucy J. Colwell; Julian Gough; Daniel H. Haft; et al. (Nucleic Acids Res., 2023)