Evolution strategies for the optimization of microdevices. - Sibylle D. Müller; Ivo F. Sbalzarini; Jens H. Walther; Petros Koumoutsakos (CEC, 2001)

Microchannel Optimization Using Multiobjective Evolution Strategies. - Ivo F. Sbalzarini; Sibylle D. Müller; Petros Koumoutsakos (EMO, 2001)

A Software Framework for the Portable Parallelization of Particle-Mesh Simulations. - Ivo F. Sbalzarini; Jens H. Walther; B. Polasek; Philippe Chatelain; Michael Bergdorf; Simone Elke Hieber; Evangelos M. Kotsalis; Petros Koumoutsakos (Euro-Par, 2006)

PPM - A highly efficient parallel particle-mesh library for the simulation of continuum systems. - Ivo F. Sbalzarini; Jens H. Walther; Michael Bergdorf; Simone Elke Hieber; Evangelos M. Kotsalis; Petros Koumoutsakos (J. Comput. Phys., 2006)

Particle Swarm CMA Evolution Strategy for the optimization of multi-funnel landscapes. - Christian L. Müller; Benedikt Baumgartner; Ivo F. Sbalzarini (IEEE Congress on Evolutionary Computation, 2009)

pCMALib: a parallel fortran 90 library for the evolution strategy with covariance matrix adaptation. - Christian L. Müller; Benedikt Baumgartner; Georg Ofenbeck; Birte Schrader; Ivo F. Sbalzarini (GECCO, 2009)

A Tunable Real-world Multi-funnel Benchmark Problem for Evolutionary Optimization - And Why Parallel Island Models Might Remedy the Failure of CMA-ES on It. - Christian L. Müller; Ivo F. Sbalzarini (IJCCI, 2009)

Bayesian Image Analysis with On-Line Confidence Estimates and its Application to Microtubule Tracking. - Janick Cardinale; Alexander Rauch; Yves Barral; Gábor Székely; Ivo F. Sbalzarini (ISBI, 2009)

Deconvolving Active Contours for Fluorescence Microscopy Images. - Jo A. Helmuth; Ivo F. Sbalzarini (ISVC (1), 2009)

Gaussian Adaptation as a unifying framework for continuous black-box optimization and adaptive Monte Carlo sampling. - Christian L. Müller; Ivo F. Sbalzarini (IEEE Congress on Evolutionary Computation, 2010)

Gaussian Adaptation Revisited - An Entropic View on Covariance Matrix Adaptation. - Christian L. Müller; Ivo F. Sbalzarini (EvoApplications (1), 2010)

Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images. - Jo A. Helmuth; Grégory Paul; Ivo F. Sbalzarini (BMC Bioinform., 2010)

Abstractions and Middleware for Petascale Computing and Beyond. - Ivo F. Sbalzarini (Int. J. Distributed Syst. Technol., 2010)

Discretization correction of general integral PSE Operators for particle methods. - Birte Schrader; Sylvain Reboux; Ivo F. Sbalzarini (J. Comput. Phys., 2010)

Intrinsically Disordered Regions May Lower the Hydration Free Energy in Proteins: A Case Study of Nudix Hydrolase in the Bacterium Deinococcus radiodurans. - Omar Awile; Anita Krisko; Ivo F. Sbalzarini; Bojan Zagrovic (PLoS Comput. Biol., 2010)

An alternating split Bregman algorithm for multi-region segmentation. - Grégory Paul; Janick Cardinale; Ivo F. Sbalzarini (ACSCC, 2011)

Global Characterization of the CEC 2005 Fitness Landscapes Using Fitness-Distance Analysis. - Christian L. Müller; Ivo F. Sbalzarini (EvoApplications (1), 2011)

Global parameter identification of stochastic reaction networks from single trajectories - Christian L. Müller; Rajesh Ramaswamy; Ivo F. Sbalzarini (CoRR, 2011)

Exact stochastic simulations of intra-cellular transport by mechanically coupled molecular motors. - Jo A. Helmuth; Sylvain Reboux; Ivo F. Sbalzarini (J. Comput. Sci., 2011)

Coupled signed-distance functions for implicit surface reconstruction. - Yuanhao Gong; Grégory Paul; Ivo F. Sbalzarini (ISBI, 2012)

Fast neighbor lists for adaptive-resolution particle simulations. - Omar Awile; Ferit Büyükkeçeci; Sylvain Reboux; Ivo F. Sbalzarini (Comput. Phys. Commun., 2012)

Energy Landscapes of Atomic Clusters as Black Box Optimization Benchmarks. - Christian L. Müller; Ivo F. Sbalzarini (Evol. Comput., 2012)

A self-organizing Lagrangian particle method for adaptive-resolution advection-diffusion simulations. - Sylvain Reboux; Birte Schrader; Ivo F. Sbalzarini (J. Comput. Phys., 2012)

Choosing the Best Kernel: Performance Models for Diffusion Operators in Particle Methods. - Birte Schrader; Sylvain Reboux; Ivo F. Sbalzarini (SIAM J. Sci. Comput., 2012)

Discrete Region Competition for Unknown Numbers of Connected Regions. - Janick Cardinale; Grégory Paul; Ivo F. Sbalzarini (IEEE Trans. Image Process., 2012)

Local weighted Gaussian curvature for image processing. - Yuanhao Gong; Ivo F. Sbalzarini (ICIP, 2013)

MosaicIA: an ImageJ/Fiji plugin for spatial pattern and interaction analysis. - Arun Shivanandan; Aleksandra Radenovic; Ivo F. Sbalzarini (BMC Bioinform., 2013)

Balancing indivisible real-valued loads in arbitrary networks. - Ömer Demirel; Ivo F. Sbalzarini (CoRR, 2013)

PPF - A Parallel Particle Filtering Library. - Ömer Demirel; Ihor Smal; Wiro J. Niessen; Erik Meijering; Ivo F. Sbalzarini (CoRR, 2013)

Piecewise Constant Sequential Importance Sampling for Fast Particle Filtering. - Ömer Demirel; Ihor Smal; Wiro J. Niessen; Erik Meijering; Ivo F. Sbalzarini (CoRR, 2013)

Balanced offline allocation of weighted balls into bins - Ömer Demirel; Ivo F. Sbalzarini (CoRR, 2013)

Coupling Image Restoration and Segmentation: A Generalized Linear Model/Bregman Perspective. - Grégory Paul; Janick Cardinale; Ivo F. Sbalzarini (Int. J. Comput. Vis., 2013)

A portable OpenCL implementation of generic particle-mesh and mesh-particle interpolation in 2D and 3D. - Ferit Büyükkeçeci; Omar Awile; Ivo F. Sbalzarini (Parallel Comput., 2013)

Receptor Concentration and Diffusivity Control Multivalent Binding of Sv40 to Membrane Bilayers. - Oliwia M. Szklarczyk; Nélido González-Segredo; Philipp Kukura; Ariella Oppenheim; Daniel Choquet; Vahid Sandoghdar; Ari Helenius; Ivo F. Sbalzarini; Helge Ewers (PLoS Comput. Biol., 2013)

A Meshless Particle Method for Poisson and Diffusion Problems with Discontinuous Coefficients and Inhomogeneous Boundary Conditions. - Nicolas Fiétier; Ömer Demirel; Ivo F. Sbalzarini (SIAM J. Sci. Comput., 2013)

Image Enhancement by Gradient Distribution Specification. - Yuanhao Gong; Ivo F. Sbalzarini (ACCV Workshops (2), 2014)

Towards an FCA-based Recommender System for Black-Box Optimization. - Josefine Asmus; Daniel Borchmann; Ivo F. Sbalzarini; Dirk Walther (FCA4AI@ECAI, 2014)

An adaptive distributed resampling algorithm with non-proportional allocation. - Ömer Demirel; Ihor Smal; Wiro J. Niessen; Erik Meijering; Ivo F. Sbalzarini (ICASSP, 2014)

Gradient Distribution Priors for Biomedical Image Processing. - Yuanhao Gong; Ivo F. Sbalzarini (CoRR, 2014)

Particle methods enable fast and simple approximation of Sobolev gradients in image segmentation. - Ivo F. Sbalzarini; Sophie Schneider; Janick Cardinale (CoRR, 2014)

A Pthreads Wrapper for Fortran 2003. - Omar Awile; Ivo F. Sbalzarini (ACM Trans. Math. Softw., 2014)

A hybrid particle-mesh method for incompressible active polar viscous gels. - Rajesh Ramaswamy; George Bourantas; Frank Jülicher; Ivo F. Sbalzarini (J. Comput. Phys., 2015)

A Natural-Scene Gradient Distribution Prior and its Application in Light-Microscopy Image Processing. - Yuanhao Gong; Ivo F. Sbalzarini (IEEE J. Sel. Top. Signal Process., 2016)

Automatic optimal filament segmentation with sub-pixel accuracy using generalized linear models and B-spline level-sets. - Xun Xiao; Veikko F. Geyer; Hugo Bowne-Anderson; Jonathon Howard; Ivo F. Sbalzarini (Medical Image Anal., 2016)

Robust Mapping of Process Networks to Many-Core Systems using Bio-Inspired Design Centering. - Gerald Hempel; Andrés Goens; Jerónimo Castrillón; Josefine Asmus; Ivo F. Sbalzarini (SCOPES, 2017)

pSSAlib: The partial-propensity stochastic chemical network simulator. - Oleksandr Ostrenko; Pietro Incardona; Rajesh Ramaswamy; Lutz Brusch; Ivo F. Sbalzarini (PLoS Comput. Biol., 2017)

Curvature Filters Efficiently Reduce Certain Variational Energies. - Yuanhao Gong; Ivo F. Sbalzarini (IEEE Trans. Image Process., 2017)

A Domain-Specific Language and Editor for Parallel Particle Methods. - Sven Karol; Tobias Nett; Jerónimo Castrillón; Ivo F. Sbalzarini (ACM Trans. Math. Softw., 2018)

A Proposed Framework for Interactive Virtual Reality In Situ Visualization of Parallel Numerical Simulations. - Aryaman Gupta; Ulrik Günther; Pietro Incardona; Ata Deniz Aydin; Raimund Dachselt; Stefan Gumhold; Ivo F. Sbalzarini (LDAV, 2019)

scenery: Flexible Virtual Reality Visualization on the Java VM. - Ulrik Günther; Tobias Pietzsch; Aryaman Gupta; Kyle I. S. Harrington; Pavel Tomancak; Stefan Gumhold; Ivo F. Sbalzarini (IEEE VIS (Short Papers), 2019)

scenery - Flexible Virtual Reality Visualisation on the Java VM. - Ulrik Günther; Tobias Pietzsch; Aryaman Gupta; Kyle I. S. Harrington; Pavel Tomancak; Stefan Gumhold; Ivo F. Sbalzarini (CoRR, 2019)

Stability selection enables robust learning of partial differential equations from limited noisy data. - Suryanarayana Maddu; Bevan L. Cheeseman; Ivo F. Sbalzarini; Christian L. Müller (CoRR, 2019)

OpenFPM: A scalable open framework for particle and particle-mesh codes on parallel computers. - Pietro Incardona; Antonio Leo; Yaroslav Zaluzhnyi; Rajesh Ramaswamy; Ivo F. Sbalzarini (Comput. Phys. Commun., 2019)

Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality. - Ulrik Günther; Kyle I. S. Harrington; Raimund Dachselt; Ivo F. Sbalzarini (ECCV Workshops (1), 2020)

An Architecture for Interactive In Situ Visualization and its Transparent Implementation in OpenFPM. - Aryaman Gupta; Pietro Incardona; Ata Deniz Aydin; Stefan Gumhold; Ulrik Günther; Ivo F. Sbalzarini (ISAV@SC, 2020)

A robustness measure for singular point and index estimation in discretized orientation and vector fields. - Karl B. Hoffmann; Ivo F. Sbalzarini (CoRR, 2020)

Multivariate Interpolation on Unisolvent Nodes - Lifting the Curse of Dimensionality. - Michael Hecht; Krzysztof Gonciarz; Jannik Michelfeit; Vladimir Sivkin; Ivo F. Sbalzarini (CoRR, 2020)

Learning physically consistent mathematical models from data using group sparsity. - Suryanarayana Maddu; Bevan L. Cheeseman; Christian L. Müller; Ivo F. Sbalzarini (CoRR, 2020)

Big-Data Analytics transformiert die Lebenswissenschaften. - Ivo F. Sbalzarini (Inform. Spektrum, 2020)

The OpenPME Problem Solving Environment for Numerical Simulations. - Nesrine Khouzami; Lars Schütze; Pietro Incardona; Landfried Kraatz; Tina Subic; Jerónimo Castrillón; Ivo F. Sbalzarini (ICCS (1), 2021)

Particle-Based Segmentation Of Extended Objects On Curved Biological Membranes. - Anastasia Solomatina; Yannis Kalaidzidis; Alice Cezanne; Karen Soans; Caren Norden; Marino Zerial; Ivo F. Sbalzarini (ISBI, 2021)

Distributed Sparse Block Grids on GPUs. - Pietro Incardona; Tommaso Bianucci; Ivo F. Sbalzarini (ISC, 2021)

STENCIL-NET: Data-driven solution-adaptive discretization of partial differential equations. - Suryanarayana Maddu; Dominik Sturm; Bevan L. Cheeseman; Christian L. Müller; Ivo F. Sbalzarini (CoRR, 2021)

A Mathematical Definition of Particle Methods. - Johannes Bamme; Ivo F. Sbalzarini (CoRR, 2021)

A C++ Library for Memory Layout and Performance Portability of Scientific Applications. - Pietro Incardona; Aryaman Gupta; Serhii Yaskovets; Ivo F. Sbalzarini (Euro-Par Workshops, 2022)

Design centering enables robustness screening of pattern formation models. - Anastasia Solomatina; Alice Cezanne; Yannis Kalaidzidis; Marino Zerial; Ivo F. Sbalzarini (Bioinform., 2022)

Learning deterministic hydrodynamic equations from stochastic active particle dynamics. - Suryanarayana Maddu; Quentin Vagne; Ivo F. Sbalzarini (CoRR, 2022)

Mesh-free collocation for surface differential operators. - Abhinav Singh; Alejandra Foggia; Pietro Incardona; Ivo F. Sbalzarini (CoRR, 2022)

Efficient Raycasting of View-Dependent Piecewise Constant Representations of Volumetric Data. - Aryaman Gupta; Ulrik Günther; Pietro Incardona; Guido Reina; Steffen Frey; Stefan Gumhold; Ivo F. Sbalzarini (CoRR, 2022)

Content-adaptive generation and parallel compositing of volumetric depth images for responsive visualization of large volume data. - Aryaman Gupta; Pietro Incardona; Paul Hunt; Guido Reina; Steffen Frey; Stefan Gumhold; Ulrik Günther; Ivo F. Sbalzarini (CoRR, 2022)

Corvo: Visualizing CellxGene Single-Cell Datasets in Virtual Reality. - Luke Hyman; Ivo F. Sbalzarini; Stephen Quake; Ulrik Günther (CoRR, 2022)

Model-based autotuning of discretization methods in numerical simulations of partial differential equations. - Nesrine Khouzami; Friedrich Michel; Pietro Incardona; Jerónimo Castrillón; Ivo F. Sbalzarini (J. Comput. Sci., 2022)

Inverse Dirichlet weighting enables reliable training of physics informed neural networks. - Suryanarayana Maddu; Dominik Sturm; Christian L. Müller; Ivo F. Sbalzarini (Mach. Learn. Sci. Technol., 2022)

Parallel Discrete Convolutions on Adaptive Particle Representations of Images. - Joel Jonsson; Bevan L. Cheeseman; Suryanarayana Maddu; Krzysztof Gonciarz; Ivo F. Sbalzarini (IEEE Trans. Image Process., 2022)

Parallel Compositing of Volumetric Depth Images for Interactive Visualization of Distributed Volumes at High Frame Rates. - Aryaman Gupta; Pietro Incardona; Anton Brock; Guido Reina; Steffen Frey; Stefan Gumhold; Ulrik Günther; Ivo F. Sbalzarini (EGPGV@EuroVis, 2023)

Efficient Raycasting of Volumetric Depth Images for Remote Visualization of Large Volumes at High Frame Rates. - Aryaman Gupta; Ulrik Günther; Pietro Incardona; Guido Reina; Steffen Frey; Stefan Gumhold; Ivo F. Sbalzarini (PacificVis, 2023)

A portable C++ library for memory and compute abstraction on multi-core CPUs and GPUs. - Pietro Incardona; Aryaman Gupta; Serhii Yaskovets; Ivo F. Sbalzarini (Concurr. Comput. Pract. Exp., 2023)

Computational Power of Particle Methods. - Johannes Pahlke; Ivo F. Sbalzarini (CoRR, 2023)

Learning locally dominant force balances in active particle systems. - Dominik Sturm; Suryanarayana Maddu; Ivo F. Sbalzarini (CoRR, 2023)

A Distributed Algebra System for Time Integration on Parallel Computers. - Abhinav Singh; Landfried Kraatz; Pietro Incardona; Ivo F. Sbalzarini (CoRR, 2023)

A Unifying Mathematical Definition of Particle Methods. - Johannes Pahlke; Ivo F. Sbalzarini (IEEE Open J. Comput. Soc., 2023)

Global Polynomial Level Sets for Numerical Differential Geometry of Smooth Closed Surfaces. - Sachin K. Thekke Veettil; Gentian Zavalani; Uwe Hernandez Acosta; Ivo F. Sbalzarini; Michael Hecht (SIAM J. Sci. Comput., 2023)

An open-source pipeline for solving continuous reaction-diffusion models in image-based geometries of porous media. - Justina Stark; Ivo F. Sbalzarini (J. Comput. Sci., 2023)

A Meshfree Collocation Scheme for Surface Differential Operators on Point Clouds. - Abhinav Singh; Alejandra Foggia; Pietro Incardona; Ivo F. Sbalzarini (J. Sci. Comput., 2023)

Adaptive weighting of Bayesian physics informed neural networks for multitask and multiscale forward and inverse problems. - Sarah Perez 003; Suryanarayana Maddu; Ivo F. Sbalzarini; Philippe Poncet (J. Comput. Phys., 2023)

Live and Interactive 3D Photomanipulation under the Microscope using Virtual Reality. - Jan Tiemann; Matthew McGinity; Ivo F. Sbalzarini; Ulrik Günther (CHI Extended Abstracts, 2024)

Evaluating Large Language Model Literature Reviews in Interdisciplinary Science: A Systems Biology Perspective. - Charvi Jain; Sahar Vahdati; Nandu Gopan; Ivo F. Sbalzarini; Jens Lehmann 001 (EKAW (Companion), 2024)

Push-Forward Signed Distance Functions enable interpretable and robust continuous shape quantification. - Roua Rouatbi; Juan Esteban Suarez; Ivo F. Sbalzarini (CoRR, 2024)

A high-order fully Lagrangian particle level-set method for dynamic surfaces. - Lennart J. Schulze; Sachin K. Thekke Veettil; Ivo F. Sbalzarini (J. Comput. Phys., 2024)

Proven Distributed Memory Parallelization of Particle Methods. - Johannes Pahlke; Ivo F. Sbalzarini (ACM Trans. Parallel Comput., 2024)

APR-CNN: Convolutional Neural Networks for the Adaptive Particle Representation of Large Microscopy Images. - Joel Jonsson; Bevan Leslie Cheeseman; Ivo F. Sbalzarini (Trans. Mach. Learn. Res., 2025)

Multivariate Newton Interpolation in Downward Closed Spaces Reaches the Optimal Geometric Approximation Rates for Bos-Levenberg-Trefethen Functions. - Michael Hecht; Phil-Alexander Hofmann; Damar Wicaksono; Uwe Hernandez Acosta; Krzysztof Gonciarz; Jannik Kissinger; Vladimir Sivkin; Ivo F. Sbalzarini (CoRR, 2025)

Data-efficient inverse design of spinodoid metamaterials. - Max Rosenkranz; Markus Kästner; Ivo F. Sbalzarini (CoRR, 2025)