Quantification and Analysis of Combination Drug Synergy in High-Throughput Transcriptome Studies. - Zeynep H. Gümüs; Fernando Siso-Nadal; Ada Gjrezi; Paul McDonagh; Iya Khalil; Paraskevi Giannakakou; Harel Weinstein (BIBE, 2010)

Attention-Based LSTM Network for COVID-19 Clinical Trial Parsing. - Xiong Liu 001; Luca A. Finelli; Greg L. Hersch; Iya Khalil (IEEE BigData, 2020)

Clinical Trial Information Extraction with BERT. - Xiong Liu 001; Greg L. Hersch; Iya Khalil; Murthy V. Devarakonda (ICHI, 2021)

A Scalable AI Approach for Clinical Trial Cohort Optimization. - Xiong Liu 001; Cheng Shi; Uday Deore; Yingbo Wang; Myah Tran; Iya Khalil; Murthy V. Devarakonda (PKDD/ECML Workshops (2), 2021)

EEG-NeXt: A Modernized ConvNet for The Classification of Cognitive Activity from EEG. - Andac Demir; Iya Khalil; Bulent Kiziltan (CoRR, 2022)

Customizing Knowledge Graph Embedding to Improve Clinical Study Recommendation. - Xiong Liu 001; Iya Khalil; Murthy V. Devarakonda (CoRR, 2022)

TEDDY: A Family Of Foundation Models For Understanding Single Cell Biology. - Alexis Chevalier; Soumya Ghosh; Urvi Awasthi; James Watkins; Julia Bieniewska; Nichita Mitrea; Olga Kotova; Kirill Shkura; Andrew Noble; Michael Steinbaugh; Julien Delile; Christoph Meier; et al. (CoRR, 2025)