Nencki Genomics Database - Ensembl funcgen enhanced with intersections, user data and genome-wide TFBS motifs. - Izabella Krystkowiak; Jakub Lenart; Konrad J. Debski; Piotr Kuterba; Michal Petas; Bozena Kaminska; Michal Dabrowski (Database J. Biol. Databases Curation, 2013)

Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data. - Michal Dabrowski; Norbert Dojer; Izabella Krystkowiak; Bozena Kaminska; Bartek Wilczynski (BMC Bioinform., 2015)

SLiMSearch: a framework for proteome-wide discovery and annotation of functional modules in intrinsically disordered regions. - Izabella Krystkowiak; Norman E. Davey (Nucleic Acids Res., 2017)

PSSMSearch: a server for modeling, visualization, proteome-wide discovery and annotation of protein motif specificity determinants. - Izabella Krystkowiak; Jean Manguy; Norman E. Davey (Nucleic Acids Res., 2018)