Caesar: Segment-Wise Alignment Method for Solving Discontinuous Deformations. - Sergiy Popovych; J. Alexander Bae; H. Sebastian Seung (ISBI, 2020)

AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions. - Donglai Wei 001; Kisuk Lee; Hanyu Li; Ran Lu; J. Alexander Bae; Zequan Liu; Lifu Zhang; Márcia dos Santos; Zudi Lin; Thomas D. Uram; Xueying Wang 002; Ignacio Arganda-Carreras; et al. (MICCAI (1), 2021)

RealNeuralNetworks.jl: An Integrated Julia Package for Skeletonization, Morphological Analysis, and Synaptic Connectivity Analysis of Terabyte-Scale 3D Neural Segmentations. - Jingpeng Wu; Nicholas L. Turner; J. Alexander Bae; Ashwin Vishwanathan; H. Sebastian Seung (Frontiers Neuroinformatics, 2022)

Structural and functional diversity of densely reconstructed cells in the mouse visual system - J. Alexander Bae (2022)