MMM: a sequence-to-structure alignment protocol. - Brajesh Kumar Rai; Carlos J. Madrid-Aliste; J. Eduardo Fajardo; András Fiser (Bioinform., 2006)

Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments. - Narcis Fernandez-Fuentes; Brajesh Kumar Rai; Carlos J. Madrid-Aliste; J. Eduardo Fajardo; András Fiser (Bioinform., 2007)

M4T: a comparative protein structure modeling server. - Narcis Fernandez-Fuentes; Carlos J. Madrid-Aliste; Brajesh Kumar Rai; J. Eduardo Fajardo; András Fiser (Nucleic Acids Res., 2007)

Protein structure based prediction of catalytic residues. - J. Eduardo Fajardo; András Fiser (BMC Bioinform., 2013)

Protein - protein binding supersites. - Raji Viswanathan; J. Eduardo Fajardo; Gabriel Steinberg; Matthew Haller; András Fiser (PLoS Comput. Biol., 2019)

Microwave tomography with phaseless data on the calcaneus by means of artificial neural networks. - J. Eduardo Fajardo; F. P. Lotto; Fernando Vericat; Carlos Manuel Carlevaro; Ramiro M. Irastorza (Medical Biol. Eng. Comput., 2020)

INTERCAAT: identifying interface residues between macromolecules. - Steven Grudman; J. Eduardo Fajardo; András Fiser (Bioinform., 2022)

Integrated structure-based protein interface prediction. - M. Walder; E. Edelstein; Moshe Carroll; S. Lazarev; J. Eduardo Fajardo; András Fiser; Raji Viswanathan (BMC Bioinform., 2022)

Optimal selection of suitable templates in protein interface prediction. - Steven Grudman; J. Eduardo Fajardo; András Fiser (Bioinform., 2023)