Sex genes for genomic analysis in human brain: internal controls for comparison of probe level data extraction. - Hanga C. Galfalvy; Loubna Erraji-Benchekroun; Peggy Smyrniotopoulos; Paul Pavlidis; Steven P. Ellis; J. John Mann; Etienne Sibille; Victoria Arango (BMC Bioinform., 2003)

OS-EM and FBP reconstructions at low count rates: effect on 3D PET studies of [11C] WAY-100635. - Marie-José Bélanger; J. John Mann; Ramin V. Parsey (NeuroImage, 2004)

Quantitative wavelet domain image processing of dynamic PET data. - Kjell Erlandsson; Yinpeng Jin; Andrew T. Wong; Peter D. Esser; Andrew F. Laine; R. Todd Ogden; Maria A. Oquendo; Ronald L. Van Heertum; J. John Mann; Ramin V. Parsey (EMBC, 2006)

A new method for assessing PET-MRI coregistration. - Christine DeLorenzo; Arno Klein; Arthur Mikhno; Neil Gray; Francesca Zanderigo; J. John Mann; Ramin V. Parsey (Image Processing, 2009)

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. - Arno Klein; Jesper L. R. Andersson; Babak A. Ardekani; John Ashburner; Brian B. Avants; Ming-Chang Chiang; Gary E. Christensen; D. Louis Collins; James C. Gee; Pierre Hellier; Joo Hyun Song; Mark Jenkinson; et al. (NeuroImage, 2009)

In vivo variation in metabotropic glutamate receptor subtype 5 binding using [11C]ABP688. - Christine DeLorenzo; Dileep J. S. Kumar; Johannes T. Tauscher; J. John Mann; Ramin V. Parsey (NeuroImage, 2010)

Evaluation of SEP-225289 transporter occupancy using positron emission tomography. - Christine DeLorenzo; Sarah Lichenstein; Karen E. Schaefer; Judith Dunn; Randall Marshall; Brigitte Robertson; J. John Mann; Ramin V. Parsey (NeuroImage, 2010)

Evaluation of volume-based and surface-based brain image registration methods. - Arno Klein; Satrajit S. Ghosh; Brian B. Avants; B. T. Thomas Yeo; Bruce Fischl; Babak A. Ardekani; James C. Gee; J. John Mann; Ramin V. Parsey (NeuroImage, 2010)

Suicide risk detection with PET WAY and DASB. - Jeffrey Miller; Matthew Milak; R. Todd Ogden; Dileep J. S. Kumar; Ramin V. Parsey; J. John Mann (NeuroImage, 2010)

Evaluating sources of variation in kinetic modeling using an input function via the bootstrap. - R. Todd Ogden; Thaddeus Tarpey; J. John Mann; Ramin V. Parsey (NeuroImage, 2010)

Binding saturation with the serotonin 1A receptor agonist [H-3]CUMI-101 and the antagonist [H-3]MPPF, in awake rats. - Mikael Palner; Mark D. Underwood; Dileep J. S. Kumar; Victoria Arango; Gitte Moos Knudsen; J. John Mann; Ramin V. Parsey (NeuroImage, 2010)

A voxel-based clustering approach for the automatic selection of testing regions in the simultaneous estimation of input functions in PET. - Francesca Zanderigo; R. Todd Ogden; J. John Mann; Ramin V. Parsey (NeuroImage, 2010)

Combining brain imaging data with electronic health records to non-invasively quantify [11C]DASB binding. - Arthur Mikhno; Francesca Zanderigo; R. Todd Ogden; Michelle Mikhno; Harry Nagendra; J. John Mann; Andrew F. Laine; Ramin V. Parsey (BHI, 2014)

Genetic variation in brain-derived neurotrophic factor val66met allele is associated with altered serotonin-1A receptor binding in human brain. - Martin J. Lan; R. Todd Ogden; Yung-yu Huang; Maria A. Oquendo; Gregory M. Sullivan; Jeffrey Miller; Matthew Milak; J. John Mann; Ramin V. Parsey (NeuroImage, 2014)

Non-invasive quantification of brain [18F]-FDG uptake by combining medical health records and dynamic PET imaging data. - Elisa Roccia; Arthur Mikhno; Francesca Zanderigo; Elsa D. Angelini; R. Todd Ogden; J. John Mann; Andrew F. Laine (EMBC, 2015)

Toward Noninvasive Quantification of Brain Radioligand Binding by Combining Electronic Health Records and Dynamic PET Imaging Data. - Arthur Mikhno; Francesca Zanderigo; R. Todd Ogden; J. John Mann; Elsa D. Angelini; Andrew F. Laine; Ramin V. Parsey (IEEE J. Biomed. Health Informatics, 2015)

Estimation of the binding potential BPND without a reference region or blood samples for brain PET studies. - Martin Schain; Francesca Zanderigo; J. John Mann; R. Todd Ogden (NeuroImage, 2017)

Multicenter Validation Of Population-Based Input Function With Non-Linear Mixed Effect Modeling For Voxel-Wise Quantification Of [18F]Fdg Metabolic Rate. - Matteo Tonietto; Francesca Zanderigo; Alessandra Bertoldo; Davangere P. Devanand; J. John Mann; Benedetta Bodini; Bruno Stankoff (ISBI, 2019)

Molecular docking, dynamics simulations and 3D-QSAR modeling of arylpiperazine derivatives of 3, 5-dioxo-(2H, 4H)-1, 2, 4-triazine as 5-HT1AR agonists. - D. R. Sherin; C. K. Geethu; Jaya Prabhakaran; J. John Mann; J. S. Dileep Kumar; T. K. Manojkumar (Comput. Biol. Chem., 2019)

Quantifying Brain [18F]FDG Uptake Noninvasively by Combining Medical Health Records and Dynamic PET Imaging Data. - Elisa Roccia; Arthur Mikhno; R. Todd Ogden; J. John Mann; Andrew F. Laine; Elsa D. Angelini; Francesca Zanderigo (IEEE J. Biomed. Health Informatics, 2019)

Extracting Social Isolation Information From Psychiatric Notes in the Electronic Health Records. - Lauren A. Lepow; Braja Gopal Patra; Isotta Landi; Prakash Adekkanattu; Jyotishman Pathak; Mark Olfson; J. John Mann; Euijung Ryu; Joanna M. Biernacka; Girish N. Nadkarni; Priya Wickramaratne; Myrna Weissman; et al. (AMIA, 2021)

Extracting social determinants of health from electronic health records using natural language processing: a systematic review. - Braja Gopal Patra; Mohit Manoj Sharma; Veer Vekaria; Prakash Adekkanattu; Olga V. Patterson; Benjamin S. Glicksberg; Lauren A. Lepow; Euijung Ryu; Joanna M. Biernacka; Al'ona Furmanchuk; Thomas J. George; William R. Hogan; et al. (J. Am. Medical Informatics Assoc., 2021)

Source-to-Target Automatic Rotating Estimation (STARE) - A publicly-available, blood-free quantification approach for PET tracers with irreversible kinetics: Theoretical framework and validation for [18F]FDG. - Elizabeth A. Bartlett; R. Todd Ogden; J. John Mann; Francesca Zanderigo (NeuroImage, 2022)

Extracting Social Support and Social Isolation Information from Clinical Psychiatry Notes: Comparing a Rule-based NLP System and a Large Language Model. - Braja Gopal Patra; Lauren A. Lepow; Praneet Kasi Reddy Jagadeesh Kumar; Veer Vekaria; Mohit Manoj Sharma; Prakash Adekkanattu; Brian Fennessy; Gavin Hynes; Isotta Landi; Jorge A. Sanchez-Ruiz; Euijung Ryu; Joanna M. Biernacka; et al. (CoRR, 2024)

Extracting social support and social isolation information from clinical psychiatry notes: comparing a rule-based natural language processing system and a large language model. - Braja Gopal Patra; Lauren A. Lepow; Praneet Kasi Reddy Jagadeesh Kumar; Veer Vekaria; Mohit Manoj Sharma; Prakash Adekkanattu; Brian Fennessy; Gavin Hynes; Isotta Landi; Jorge A. Sanchez-Ruiz; Euijung Ryu; Joanna M. Biernacka; et al. (J. Am. Medical Informatics Assoc., 2025)