Use of keyword hierarchies to interpret gene expression patterns. - Daniel R. Masys; John B. Welsh; J. Lynn Fink; Michael Gribskov; Igor Klacansky; Jacques Corbeil (Bioinform., 2001)

2HAPI: A Microarray Data Analysis System. - J. Lynn Fink; Scott Drewes; Hiren Patel; John B. Welsh; Daniel R. Masys; Jacques Corbeil; Michael Gribskov (Bioinform., 2003)

Rival penalized competitive learning (RPCL): a topology-determining algorithm for analyzing gene expression data. - T. Murlidharan Nair; Christina L. Zheng; J. Lynn Fink; Robert O. Stuart; Michael Gribskov (Comput. Biol. Chem., 2003)

The PlantsP and PlantsT Functional Genomics Databases. - Jason H. Tchieu; Fariba Fana; J. Lynn Fink; Jeffrey Harper; T. Murlidharan Nair; R. Hannes Niedner; Douglas W. Smith; Kenneth Steube; Tobey M. Tam; Stella Veretnik; Degeng Wang; Michael Gribskov (Nucleic Acids Res., 2003)

PhosphoregDB: The tissue and sub-cellular distribution of mammalian protein kinases and phosphatases. - Alistair R. R. Forrest; Darrin F. Taylor; J. Lynn Fink; M. Milena Gongora; Cameron Flegg; Rohan D. Teasdale; Harukazu Suzuki; Mutsumi Kanamori; Chikatoshi Kai; Yoshihide Hayashizaki; Sean M. Grimmond (BMC Bioinform., 2006)

Evaluation and comparison of mammalian subcellular localization prediction methods. - Josefine Sprenger; J. Lynn Fink; Rohan D. Teasdale (BMC Bioinform., 2006)

LOCATE: a mouse protein subcellular localization database. - J. Lynn Fink; Rajith N. Aturaliya; Melissa J. Davis; Fasheng Zhang; Kelly Hanson; Melvena S. Teasdale; Chikatoshi Kai; Jun Kawai; Piero Carninci; Yoshihide Hayashizaki; Rohan D. Teasdale (Nucleic Acids Res., 2006)

DomainDraw: A Macromolecular Feature Drawing Program. - J. Lynn Fink; Nicholas A. Hamilton (Silico Biol., 2007)

Intrinsic Evaluation of Text Mining Tools May Not Predict Performance on Realistic Tasks. - J. Gregory Caporaso; Nita Deshpande; J. Lynn Fink; Philip E. Bourne; K. Bretonnel Cohen; Lawrence Hunter (Pacific Symposium on Biocomputing, 2008)

BioLit: integrating biological literature with databases. - J. Lynn Fink; Sergey Kushch; Parker R. Williams; Philip E. Bourne (Nucleic Acids Res., 2008)

LOCATE: a mammalian protein subcellular localization database. - Josefine Sprenger; J. Lynn Fink; Seetha Karunaratne; Kelly Hanson; Nicholas A. Hamilton; Rohan D. Teasdale (Nucleic Acids Res., 2008)

I Am Not a Scientist, I Am a Number. - Philip E. Bourne; J. Lynn Fink (PLoS Comput. Biol., 2008)

Open Access: Taking Full Advantage of the Content. - Philip E. Bourne; J. Lynn Fink; Mark Gerstein (PLoS Comput. Biol., 2008)

Computational Biology Resources Lack Persistence and Usability. - Stella Veretnik; J. Lynn Fink; Philip E. Bourne (PLoS Comput. Biol., 2008)

Word add-in for ontology recognition: semantic enrichment of scientific literature. - J. Lynn Fink; Pablo Fernicola; Rahul Chandran; Savas Parastatidis; Alex D. Wade; Oscar Naim; Greg B. Quinn; Philip E. Bourne (BMC Bioinform., 2010)

Integration of open access literature into the RCSB Protein Data Bank using BioLit. - Andreas Prlic; Marco A. Martinez; Dimitris Dimitropoulos; Bojan Beran; Benjamin T. Yukich; Peter W. Rose; Philip E. Bourne; J. Lynn Fink (BMC Bioinform., 2010)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)