Prediction of protein-protein interactions in yeast using SVMs with genomics/proteomics information and feature selection. - José Miguel Urquiza Ortiz; Ignacio Rojas Ruiz; Héctor Pomares; Luis Javier Herrera; Ginés Rubio; J. P. Florido (ISCIS, 2009)

Protein Structure Prediction by Evolutionary Multi-objective Optimization: Search Space Reduction by Using Rotamers. - José C. Calvo; Julio Ortega Lopera; Mancia Anguita; José M. Urquiza; J. P. Florido (IWANN (1), 2009)

On Selecting the Best Pre-processing Method for Affymetrix Genechips. - J. P. Florido; Héctor Pomares; Ignacio Rojas; José C. Calvo; José M. Urquiza; M. Gonzalo Claros (IWANN (1), 2009)

Method for Prediction of Protein-Protein Interactions in Yeast Using Genomics/Proteomics Information and Feature Selection. - José M. Urquiza; Ignacio Rojas; Héctor Pomares; J. P. Florido; Ginés Rubio; Luis Javier Herrera; José C. Calvo; Julio Ortega Lopera (IWANN (1), 2009)

Effect of pre-processing methods on microarray-based SVM classifiers in affymetrix genechips. - Javier Perez-Florido; Héctor Pomares; Ignacio Rojas; José Miguel Urquiza Ortiz; Luis Javier Herrera; Manuel Gonzalo Claros (IJCNN, 2010)

Prediction of Functional Associations between Proteins by Means of a Cost-Sensitive Artificial Neural Network. - J. P. Florido; Héctor Pomares; Ignacio Rojas; José M. Urquiza; Francisco M. Ortuño Guzman (IWANN (2), 2011)

Emerging Methodologies in Multiple Sequence Alignment Using High Throughput Data. - Francisco M. Ortuño Guzman; Ignacio Rojas; Héctor Pomares; José M. Urquiza; J. P. Florido (PACBB, 2011)

Using Machine Learning Techniques and Genomic/Proteomic Information from Known Databases for PPI Prediction. - José M. Urquiza; Ignacio Rojas; Héctor Pomares; Luis Javier Herrera; J. P. Florido; Francisco M. Ortuño Guzman (PACBB, 2011)

Generating Balanced Learning and Test Sets for Function Approximation Problems. - J. P. Florido; Héctor Pomares; Ignacio Rojas (Int. J. Neural Syst., 2011)

Optimization of multiple sequence alignment methodologies using a multiobjective evolutionary algorithm based on NSGA-II. - Francisco M. Ortuño Guzman; Javier Perez-Florido; José M. Urquiza; Héctor Pomares; Alberto Prieto; Ignacio Rojas (IEEE Congress on Evolutionary Computation, 2012)

Using machine learning techniques and genomic/proteomic information from known databases for defining relevant features for PPI classification. - José M. Urquiza; Ignacio Rojas; Héctor Pomares; Luis Javier Herrera; J. P. Florido; Olga Valenzuela; Maria del Mar Cepero (Comput. Biol. Medicine, 2012)

Selecting Negative Samples for PPI Prediction Using Hierarchical Clustering Methodology. - José M. Urquiza; Ignacio Rojas; Héctor Pomares; Luis Javier Herrera; Javier Perez-Florido; Olga Valenzuela (J. Appl. Math., 2012)

A deterministic model selection scheme for incremental RBFNN construction in time series forecasting. - J. P. Florido; Héctor Pomares; Ignacio Rojas; José M. Urquiza; M. A. Lopez-Gordo (Neural Comput. Appl., 2012)

Whole exome sequencing analysis pipeline for the discovery of mutations causative of human rare diseases. - Francisco Javier Lopez Domingo; Antonio Rueda Martin; Javier Perez-Florido; Alicia Vela Boza; Pablo Arce Garcia; Luis Miguel Cruz Renedo; Javier Escalante; Ana Isabel Lopez Perez; Federica Trombetta; Guillermo Antiñolo; Javier Santoyo-Lopez (IWBBIO, 2013)

Optimizing multiple sequence alignments using a genetic algorithm based on three objectives: structural information, non-gaps percentage and totally conserved columns. - Francisco M. Ortuño Guzman; Olga Valenzuela; Fernando Rojas 001; Héctor Pomares; Javier Perez-Florido; José M. Urquiza; Ignacio Rojas (Bioinform., 2013)

An effective, practical and low computational cost framework for the integration of heterogeneous data to predict functional associations between proteins by means of Artificial Neural Networks. - Javier Perez-Florido; Héctor Pomares; Ignacio Rojas; Alberto Guillén; Francisco M. Ortuño Guzman; José M. Urquiza (Neurocomputing, 2013)

ngsCAT: a tool to assess the efficiency of targeted enrichment sequencing. - Francisco J. López-Domingo; Javier Perez-Florido; Antonio Rueda; Joaquín Dopazo; Javier Santoyo-Lopez (Bioinform., 2014)

CSVS, a crowdsourcing database of the Spanish population genetic variability. - María Peña-Chilet; Gema Roldán; Javier Perez-Florido; Francisco M. Ortuño; Rosario Carmona; Virginia Aquino; Daniel López-López; Carlos Loucera; Jose Luis Fernandez-Rueda; Asunción Gallego; Francisco García-García 002; Anna González-Neira; et al. (Nucleic Acids Res., 2021)