Comparing Trees in a Phylogenetic Relationship Repository. - John Bluis; Ravi Nori; Hsin-Wei Wang; Pinglei Zhou; J. Peter Gogarten; Dong-Guk Shin (BIBE, 2001)

A hybrid clustering approach to recognition of protein families in 114 microbial genomes. - Timothy J. Harlow; J. Peter Gogarten; Mark A. Ragan (BMC Bioinform., 2004)

PentaPlot: A software tool for the illustration of genome mosaicism. - Lutz Hamel; Olga Zhaxybayeva; J. Peter Gogarten (BMC Bioinform., 2005)

GPX: A Tool for the Exploration and Visualization of Genome Evolution. - Neha Nahar; Lutz Hamel; Maria S. Poptsova; J. Peter Gogarten (BIBE, 2007)

Unsupervised Learning in Spectral Genome Analysis. - Lutz Hamel; Neha Nahar; Maria S. Poptsova; Olga Zhaxybayeva; J. Peter Gogarten (FBIT, 2007)

BranchClust: a phylogenetic algorithm for selecting gene families. - Maria S. Poptsova; J. Peter Gogarten (BMC Bioinform., 2007)

Detecting Highways of Horizontal Gene Transfer. - Mukul S. Bansal; J. Peter Gogarten; Ron Shamir (RECOMB-CG, 2010)

Detecting Highways of Horizontal Gene Transfer. - Mukul S. Bansal; Guy Banay; J. Peter Gogarten; Ron Shamir (J. Comput. Biol., 2011)

Quartet decomposition server: a platform for analyzing phylogenetic trees. - Fenglou Mao; David Williams 003; Olga Zhaxybayeva; Maria S. Poptsova; Pascal Lapierre; J. Peter Gogarten; Ying Xu 001 (BMC Bioinform., 2012)

Systematic inference of highways of horizontal gene transfer in prokaryotes. - Mukul S. Bansal; Guy Banay; Timothy J. Harlow; J. Peter Gogarten; Ron Shamir (Bioinform., 2013)

The impact of HGT on phylogenomic reconstruction methods. - Pascal Lapierre; Erica Lasek-Nesselquist; Johann Peter Gogarten (Briefings Bioinform., 2014)

Assessing the Potential of Gene Tree Parsimony for Microbial Phylogenomics. - Samson Weiner; Yutian Feng; J. Peter Gogarten; Mukul S. Bansal (RECOMB-CG, 2024)