Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage. - Jingchun Zhu; J. Zachary Sanborn; Mark Diekhans; Craig B. Lowe; Tom H. Pringle; David Haussler (PLoS Comput. Biol., 2007)

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM. - Charles J. Vaske; Stephen C. Benz; J. Zachary Sanborn; Dent Earl; Christopher Szeto; Jingchun Zhu; David Haussler; Joshua M. Stuart (Bioinform., 2010)

The UCSC cancer genomics browser: update 2011. - J. Zachary Sanborn; Stephen C. Benz; Brian Craft; Christopher Szeto; Kord M. Kober; Laurence R. Meyer; Charles J. Vaske; Mary Goldman; Kayla E. Smith; Robert M. Kuhn; Donna Karolchik; W. James Kent; et al. (Nucleic Acids Res., 2011)

The UCSC Interaction Browser: multidimensional data views in pathway context. - Christopher K. Wong; Charles J. Vaske; Sam Ng; J. Zachary Sanborn; Stephen C. Benz; David Haussler; Joshua M. Stuart (Nucleic Acids Res., 2013)