Continuum modeling in the physical sciences. - Embrecht W. C. van Groesen; Jaap Molenaar (SIAM, 2007)

Continuous-time modeling of cell fate determination in Arabidopsis flowers. - Simon van Mourik; Aalt D. J. van Dijk; Maarten de Gee; Richard G. H. Immink; Kerstin Kaufmann; Gerco C. Angenent; Roeland C. H. J. van Ham; Jaap Molenaar (BMC Syst. Biol., 2010)

Metabolic Pathway Inference from Time Series Data: A Non Iterative Approach. - Laura Astola; Marian Groenenboom; Victoria Gomez Roldan; Fred van Eeuwijk; Robert D. Hall; Arnaud Bovy; Jaap Molenaar (PRIB, 2011)

A fast algorithm to assess local structural identifiability. - Johannes D. Stigter; Jaap Molenaar (Autom., 2015)

Assessing local structural identifiability for environmental models. - Johannes D. Stigter; M. B. Beck; Jaap Molenaar (Environ. Model. Softw., 2017)

Establishing local strong accessibility of large-scale nonlinear systems by replacing the Lie algebraic rank condition. - Gerard van Willigenburg; Johannes D. Stigter; Jaap Molenaar (ECC, 2021)

The Use of Surrogate Models to Analyse Agent-Based Models. - Guus ten Broeke; George van Voorn; Arend Ligtenberg; Jaap Molenaar (J. Artif. Soc. Soc. Simul., 2021)